Wall clock time and date at job start Mon Mar 30 2020 04:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47012 * 269.99488 * 3 2 1 5 5 H 1.48496 * 109.47462 * 29.99388 * 3 2 1 6 6 H 1.48503 * 109.47550 * 149.99764 * 3 2 1 7 7 C 1.37877 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99751 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47651 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47637 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47345 * 179.97438 * 11 10 9 13 13 O 1.42893 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.42904 * 113.99946 * 180.02562 * 13 12 11 15 15 H 1.08991 * 109.73020 * 30.65955 * 14 13 12 16 16 C 1.53363 * 109.77377 * 151.33629 * 14 13 12 17 17 O 1.42894 * 109.27382 * 171.92999 * 16 14 13 18 18 C 1.42888 * 114.49857 * 295.06746 * 17 16 14 19 19 C 1.53360 * 109.28193 * 64.93240 * 18 17 16 20 20 C 1.51509 * 109.73574 * 269.99827 * 14 13 12 21 21 O 1.20757 * 121.21837 * 11.91443 * 20 14 13 22 22 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47141 * 59.99899 * 9 7 2 24 24 H 1.09007 * 109.46666 * 300.00261 * 9 7 2 25 25 H 1.09000 * 109.47295 * 59.99546 * 10 9 7 26 26 H 1.09001 * 109.46664 * 300.00311 * 10 9 7 27 27 H 1.09001 * 109.46583 * 59.99915 * 11 10 9 28 28 H 1.08995 * 109.46920 * 300.00329 * 11 10 9 29 29 H 1.08999 * 109.46725 * 59.99866 * 12 11 10 30 30 H 1.09001 * 109.47009 * 300.00544 * 12 11 10 31 31 H 1.09003 * 109.50573 * 291.86900 * 16 14 13 32 32 H 1.09002 * 109.50516 * 51.95536 * 16 14 13 33 33 H 1.09003 * 109.50235 * 304.98966 * 18 17 16 34 34 H 1.09003 * 109.50487 * 184.87518 * 18 17 16 35 35 H 1.08996 * 109.74380 * 188.09366 * 19 18 17 36 36 H 1.09003 * 109.73312 * 67.38560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0009 12 6 6.0614 -4.0792 0.0015 13 8 7.4904 -4.0792 0.0020 14 6 8.0716 -5.3847 0.0019 15 1 7.4152 -6.0797 -0.5216 16 6 9.4397 -5.3435 -0.6898 17 8 10.0923 -6.6033 -0.5198 18 6 10.4224 -6.9219 0.8334 19 6 9.1312 -7.0865 1.6443 20 6 8.2791 -5.8524 1.4280 21 8 7.7832 -5.2635 2.3583 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6805 -0.8889 25 1 3.6585 -3.1503 -0.8892 26 1 3.6577 -3.1506 0.8907 27 1 5.9148 -2.1229 0.8910 28 1 5.9148 -2.1228 -0.8890 29 1 5.6980 -4.5933 -0.8883 30 1 5.6980 -4.5927 0.8916 31 1 9.3042 -5.1443 -1.7529 32 1 10.0481 -4.5552 -0.2464 33 1 11.0207 -6.1173 1.2611 34 1 10.9901 -7.8520 0.8603 35 1 9.3714 -7.1870 2.7027 36 1 8.5923 -7.9703 1.3029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686522490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:40 Heat of formation + Delta-G solvation = -145.328377 kcal Electronic energy + Delta-G solvation = -17120.666389 eV Core-core repulsion = 14183.705896 eV Total energy + Delta-G solvation = -2936.960494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66039 -38.22032 -37.65953 -34.77546 -32.41573 -32.04934 -30.81851 -28.84855 -24.99248 -24.29198 -24.00397 -21.57880 -20.21633 -19.79814 -17.32762 -17.02527 -16.71826 -16.61808 -16.18608 -15.60822 -15.12149 -14.51045 -14.38894 -14.13547 -13.80088 -13.41071 -12.88874 -12.70181 -12.44090 -11.99442 -11.96035 -11.69674 -11.44682 -11.21679 -10.82681 -10.73773 -10.38543 -10.26977 -9.88386 -9.68367 -9.55723 -9.21631 -9.14660 -8.50693 -6.01462 -3.99267 1.56477 3.02803 3.33798 3.39093 3.41007 3.46189 3.75350 4.27799 4.39195 4.48663 4.51876 4.60815 4.67135 5.08235 5.12375 5.20902 5.26512 5.32426 5.33325 5.42083 5.46632 5.64642 5.92908 6.00745 6.33758 6.52367 6.63639 6.72383 6.86402 7.01405 7.22190 7.34087 7.47432 7.82906 8.57144 9.03361 9.61365 11.12111 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.055224 B = 0.003613 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.907602 B = 7748.584561 C = 7876.136265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.117 4.117 12 C 0.061 3.939 13 O -0.363 6.363 14 C 0.010 3.990 15 H 0.102 0.898 16 C 0.072 3.928 17 O -0.370 6.370 18 C 0.064 3.936 19 C -0.205 4.205 20 C 0.328 3.672 21 O -0.426 6.426 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.212 -14.962 -0.307 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.155 4.155 12 C -0.014 4.014 13 O -0.281 6.281 14 C -0.050 4.050 15 H 0.120 0.880 16 C -0.005 4.005 17 O -0.288 6.288 18 C -0.013 4.013 19 C -0.243 4.243 20 C 0.200 3.800 21 O -0.296 6.296 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 21.930 -14.463 0.053 26.270 hybrid contribution 0.005 0.733 0.262 0.778 sum 21.935 -13.731 0.315 25.880 Atomic orbital electron populations 1.69918 1.06318 1.26861 1.51361 1.25042 0.94748 0.99238 0.94585 0.86756 0.80408 0.83517 0.78498 1.20294 1.21412 1.18945 1.21169 0.89588 0.94454 1.50635 0.91090 1.19566 0.97019 0.92154 0.96357 1.21398 0.90879 1.00265 1.01196 1.21658 0.97595 0.93448 1.02809 1.22844 0.78522 0.99947 1.00136 1.87943 1.21714 1.23859 1.94628 1.23417 0.98225 0.88413 0.94987 0.88013 1.22606 0.89572 0.86052 1.02257 1.87973 1.77321 1.37392 1.26144 1.22685 0.94443 1.02351 0.81842 1.23115 0.98438 0.99004 1.03772 1.25659 0.78039 0.84751 0.91528 1.90456 1.40222 1.53457 1.45504 0.92776 0.96527 0.96975 0.92694 0.92658 0.91512 0.91579 0.93094 0.92994 0.86652 0.91353 0.92161 0.87266 0.88067 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.12 -2.03 5.58 -26.73 -0.15 -2.18 16 12 C 0.06 0.91 5.64 37.16 0.21 1.12 16 13 O -0.36 -5.15 9.69 -53.88 -0.52 -5.67 16 14 C 0.01 0.10 3.09 -27.30 -0.08 0.02 16 15 H 0.10 0.92 7.81 -51.93 -0.41 0.51 16 16 C 0.07 0.61 6.52 37.35 0.24 0.85 16 17 O -0.37 -2.96 10.68 -35.23 -0.38 -3.33 16 18 C 0.06 0.38 6.85 37.34 0.26 0.63 16 19 C -0.21 -1.42 6.40 -27.30 -0.17 -1.60 16 20 C 0.33 3.68 6.72 -28.24 -0.19 3.49 16 21 O -0.43 -6.61 17.00 -12.65 -0.22 -6.82 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 31 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -34.07 300.85 -6.86 -40.93 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -5.81 Total: -5.46 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.57 Total: -14.06 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.11 Total: -15.83 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.07 -6.86 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686522490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.398 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds