Wall clock time and date at job start Mon Mar 30 2020 04:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47012 * 269.99488 * 3 2 1 5 5 H 1.48496 * 109.47462 * 29.99388 * 3 2 1 6 6 H 1.48503 * 109.47550 * 149.99764 * 3 2 1 7 7 C 1.37877 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99751 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47651 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47637 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47345 * 179.97438 * 11 10 9 13 13 O 1.42893 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.42904 * 113.99946 * 180.02562 * 13 12 11 15 15 H 1.08991 * 109.73020 * 30.65955 * 14 13 12 16 16 C 1.53363 * 109.77377 * 151.33629 * 14 13 12 17 17 O 1.42894 * 109.27382 * 171.92999 * 16 14 13 18 18 C 1.42888 * 114.49857 * 295.06746 * 17 16 14 19 19 C 1.53360 * 109.28193 * 64.93240 * 18 17 16 20 20 C 1.51509 * 109.73574 * 269.99827 * 14 13 12 21 21 O 1.20757 * 121.21837 * 11.91443 * 20 14 13 22 22 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47141 * 59.99899 * 9 7 2 24 24 H 1.09007 * 109.46666 * 300.00261 * 9 7 2 25 25 H 1.09000 * 109.47295 * 59.99546 * 10 9 7 26 26 H 1.09001 * 109.46664 * 300.00311 * 10 9 7 27 27 H 1.09001 * 109.46583 * 59.99915 * 11 10 9 28 28 H 1.08995 * 109.46920 * 300.00329 * 11 10 9 29 29 H 1.08999 * 109.46725 * 59.99866 * 12 11 10 30 30 H 1.09001 * 109.47009 * 300.00544 * 12 11 10 31 31 H 1.09003 * 109.50573 * 291.86900 * 16 14 13 32 32 H 1.09002 * 109.50516 * 51.95536 * 16 14 13 33 33 H 1.09003 * 109.50235 * 304.98966 * 18 17 16 34 34 H 1.09003 * 109.50487 * 184.87518 * 18 17 16 35 35 H 1.08996 * 109.74380 * 188.09366 * 19 18 17 36 36 H 1.09003 * 109.73312 * 67.38560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0009 12 6 6.0614 -4.0792 0.0015 13 8 7.4904 -4.0792 0.0020 14 6 8.0716 -5.3847 0.0019 15 1 7.4152 -6.0797 -0.5216 16 6 9.4397 -5.3435 -0.6898 17 8 10.0923 -6.6033 -0.5198 18 6 10.4224 -6.9219 0.8334 19 6 9.1312 -7.0865 1.6443 20 6 8.2791 -5.8524 1.4280 21 8 7.7832 -5.2635 2.3583 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6805 -0.8889 25 1 3.6585 -3.1503 -0.8892 26 1 3.6577 -3.1506 0.8907 27 1 5.9148 -2.1229 0.8910 28 1 5.9148 -2.1228 -0.8890 29 1 5.6980 -4.5933 -0.8883 30 1 5.6980 -4.5927 0.8916 31 1 9.3042 -5.1443 -1.7529 32 1 10.0481 -4.5552 -0.2464 33 1 11.0207 -6.1173 1.2611 34 1 10.9901 -7.8520 0.8603 35 1 9.3714 -7.1870 2.7027 36 1 8.5923 -7.9703 1.3029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686522490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:40 Heat of formation + Delta-G solvation = -168.201605 kcal Electronic energy + Delta-G solvation = -17121.658247 eV Core-core repulsion = 14183.705896 eV Total energy + Delta-G solvation = -2937.952351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.47702 -38.94925 -38.73047 -36.47263 -34.44403 -32.65924 -31.95666 -30.37569 -26.65366 -25.00072 -24.71895 -23.18043 -21.86644 -20.68217 -18.89089 -18.20132 -17.76392 -17.59453 -16.88667 -16.49352 -16.36828 -16.21787 -15.32351 -15.25824 -14.89441 -14.75931 -14.55686 -13.83717 -13.49668 -13.37977 -13.29024 -13.03576 -12.58889 -12.54707 -12.16674 -11.90636 -11.78401 -11.59418 -11.49344 -11.32171 -11.31186 -10.88120 -10.77879 -10.12859 -8.31304 -6.35661 0.71966 1.34776 1.37156 1.49704 2.22284 2.35379 2.68757 3.01883 3.03945 3.59631 3.71764 3.89442 3.93119 4.00287 4.12897 4.18828 4.35409 4.42930 4.50614 4.52603 4.61696 4.75469 4.79769 4.83843 4.90429 5.06777 5.07386 5.13043 5.49004 5.58480 5.65074 5.83283 6.08415 6.26475 6.35745 6.72134 7.29195 8.85632 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.055224 B = 0.003613 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.907602 B = 7748.584561 C = 7876.136265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.109 4.109 12 C 0.069 3.931 13 O -0.380 6.380 14 C -0.001 4.001 15 H 0.120 0.880 16 C 0.079 3.921 17 O -0.374 6.374 18 C 0.061 3.939 19 C -0.197 4.197 20 C 0.324 3.676 21 O -0.480 6.480 22 H 0.267 0.733 23 H 0.016 0.984 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.834 -15.340 -1.048 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.050 4.050 10 C -0.130 4.130 11 C -0.146 4.146 12 C -0.007 4.007 13 O -0.299 6.299 14 C -0.060 4.060 15 H 0.138 0.862 16 C 0.002 3.998 17 O -0.292 6.292 18 C -0.015 4.015 19 C -0.235 4.235 20 C 0.201 3.799 21 O -0.355 6.355 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.127 0.873 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.583 -14.875 -0.704 28.742 hybrid contribution -0.836 0.726 0.494 1.213 sum 23.747 -14.149 -0.210 27.643 Atomic orbital electron populations 1.70068 1.08309 1.28238 1.52673 1.26059 0.95678 1.03680 0.94046 0.85611 0.79346 0.78032 0.79393 1.18750 1.20843 1.17327 1.21533 0.92201 0.93185 1.50464 0.94985 1.19535 0.93829 0.95056 0.96584 1.21241 0.93300 0.97498 1.00998 1.21465 0.95005 0.95369 1.02810 1.22623 0.79379 0.98153 1.00571 1.87882 1.20936 1.26253 1.94799 1.23790 0.99632 0.87226 0.95364 0.86232 1.22596 0.88104 0.86386 1.02760 1.87981 1.76983 1.36963 1.27321 1.22919 0.93930 1.03975 0.80688 1.23144 0.98295 0.97278 1.04740 1.26324 0.77122 0.85347 0.91134 1.90443 1.42681 1.55464 1.46866 0.92429 0.96573 0.95903 0.92294 0.93587 0.92476 0.90562 0.91047 0.94168 0.85251 0.91587 0.91877 0.84255 0.87313 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.22 13.96 21.45 0.30 -60.93 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.95 45.60 27.47 68.60 1.88 47.49 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 7 C -0.54 -32.08 9.66 25.60 0.25 -31.84 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 11 C -0.11 -3.64 5.58 30.59 0.17 -3.47 16 12 C 0.07 1.97 5.64 71.98 0.41 2.37 16 13 O -0.38 -10.31 9.69 -131.15 -1.27 -11.58 16 14 C 0.00 -0.02 3.09 30.23 0.09 0.08 16 15 H 0.12 1.89 7.81 -2.39 -0.02 1.87 16 16 C 0.08 1.14 6.52 72.10 0.47 1.61 16 17 O -0.37 -4.87 10.68 -148.98 -1.59 -6.46 16 18 C 0.06 0.54 6.85 72.10 0.49 1.03 16 19 C -0.20 -2.27 6.40 30.23 0.19 -2.07 16 20 C 0.32 6.95 6.72 29.62 0.20 7.15 16 21 O -0.48 -15.03 17.00 16.39 0.28 -14.75 16 22 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 23 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 24 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 30 H 0.04 1.23 7.81 -2.39 -0.02 1.21 16 31 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 33 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 34 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -74.94 300.85 3.60 -71.34 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 0.98 Total: 3.54 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.01 Total: -28.64 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.30 Total: -60.93 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -2.58 Total: -32.79 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.49 kcal Total: -74.94 3.60 -71.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686522490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.862 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds