Wall clock time and date at job start Mon Mar 30 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47189 * 299.99665 * 3 2 1 6 6 H 1.48502 * 109.47441 * 59.99976 * 3 2 1 7 7 C 1.37876 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99588 * 187.25568 * 7 2 1 9 9 C 1.50694 * 120.00306 * 7.24667 * 7 2 1 10 10 C 1.53002 * 115.55226 * 274.64701 * 9 7 2 11 11 O 1.42897 * 109.47445 * 300.86820 * 10 9 7 12 12 C 1.42901 * 114.00434 * 184.18720 * 11 10 9 13 13 H 1.09006 * 109.56869 * 32.87832 * 12 11 10 14 14 C 1.53092 * 109.52544 * 272.72103 * 12 11 10 15 15 O 1.42895 * 109.41163 * 182.48348 * 14 12 11 16 16 C 1.42903 * 114.10038 * 61.16269 * 15 14 12 17 17 C 1.53090 * 109.40929 * 298.83542 * 16 15 14 18 18 C 1.53172 * 109.16477 * 57.61039 * 17 16 15 19 19 H 1.09000 * 109.54559 * 183.14525 * 18 17 16 20 20 O 1.42907 * 109.54092 * 62.97304 * 18 17 16 21 21 C 1.52998 * 117.49855 * 60.31831 * 9 7 2 22 22 C 1.53005 * 117.49930 * 128.97690 * 9 7 2 23 23 H 0.96999 * 120.00149 * 5.00539 * 1 2 3 24 24 H 1.09000 * 109.47500 * 180.86630 * 10 9 7 25 25 H 1.09006 * 109.47073 * 60.86914 * 10 9 7 26 26 H 1.09001 * 109.47947 * 62.49903 * 14 12 11 27 27 H 1.08992 * 109.48721 * 302.47418 * 14 12 11 28 28 H 1.09003 * 109.48249 * 178.86067 * 16 15 14 29 29 H 1.08997 * 109.49260 * 58.82629 * 16 15 14 30 30 H 1.09004 * 109.52929 * 297.70152 * 17 16 15 31 31 H 1.09000 * 109.57656 * 177.54716 * 17 16 15 32 32 H 0.96697 * 114.00388 * 60.18190 * 20 18 17 33 33 H 1.09006 * 117.49907 * 215.00576 * 21 9 7 34 34 H 1.09002 * 117.49595 * 0.02562 * 21 9 7 35 35 H 1.08996 * 117.49736 * 359.97438 * 22 9 7 36 36 H 1.09003 * 117.49656 * 144.97565 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0780 -1.1978 0.1176 9 6 1.2600 -2.4938 -0.1657 10 6 0.6872 -3.0943 1.1197 11 8 1.7476 -3.3347 2.0469 12 6 1.3318 -3.9846 3.2498 13 1 0.5068 -4.6629 3.0319 14 6 0.8763 -2.9352 4.2672 15 8 0.5158 -3.5832 5.4887 16 6 1.5863 -4.3004 6.1067 17 6 2.0703 -5.4046 5.1632 18 6 2.5048 -4.7767 3.8354 19 1 2.7980 -5.5625 3.1392 20 8 3.6109 -3.9003 4.0604 21 6 0.4602 -2.6909 -1.4550 22 6 1.7626 -3.4648 -1.2361 23 1 -0.4850 0.8368 -0.0733 24 1 0.1857 -4.0343 0.8897 25 1 -0.0283 -2.3987 1.5583 26 1 0.0142 -2.3970 3.8730 27 1 1.6888 -2.2332 4.4540 28 1 1.2357 -4.7458 7.0378 29 1 2.4082 -3.6164 6.3178 30 1 1.2603 -6.1117 4.9840 31 1 2.9153 -5.9254 5.6136 32 1 4.3886 -4.3364 4.4344 33 1 -0.4742 -3.2483 -1.3875 34 1 0.4728 -1.8805 -2.1839 35 1 2.6314 -3.1631 -1.8211 36 1 1.6855 -4.5312 -1.0243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686570739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:48 Heat of formation + Delta-G solvation = -140.366716 kcal Electronic energy + Delta-G solvation = -18382.560978 eV Core-core repulsion = 15445.815638 eV Total energy + Delta-G solvation = -2936.745340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89182 -38.96108 -37.44642 -37.01796 -33.98078 -32.64048 -31.18504 -28.06538 -26.99997 -25.81014 -24.12004 -22.91174 -21.49124 -20.91217 -18.25179 -18.02478 -17.88114 -17.30517 -16.79910 -16.60261 -16.16743 -15.77942 -15.52252 -15.11180 -14.52836 -14.41425 -13.92076 -13.46683 -13.20357 -12.99500 -12.89652 -12.85897 -12.55323 -12.34652 -12.16242 -12.02494 -11.49710 -11.40872 -11.16098 -10.90890 -10.63006 -10.43388 -10.11707 -9.89530 -8.10994 -6.18920 1.37801 1.40699 1.51975 2.43504 2.57042 3.05485 3.18185 3.29267 3.55027 3.70555 3.83607 3.95064 4.03034 4.13607 4.30892 4.45740 4.49439 4.55854 4.66151 4.67551 4.74180 4.79466 4.87425 4.93654 4.99531 5.04289 5.14361 5.22354 5.60774 5.61479 5.79189 6.07457 6.39287 6.60070 6.84433 6.96798 7.47783 8.98191 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.007254 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.389535 B = 3858.830992 C = 4273.902746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.493 4.493 8 H 0.042 0.958 9 C 0.008 3.992 10 C 0.116 3.884 11 O -0.369 6.369 12 C 0.054 3.946 13 H 0.080 0.920 14 C 0.053 3.947 15 O -0.395 6.395 16 C 0.051 3.949 17 C -0.174 4.174 18 C 0.108 3.892 19 H 0.071 0.929 20 O -0.573 6.573 21 C -0.151 4.151 22 C -0.184 4.184 23 H 0.259 0.741 24 H 0.038 0.962 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.121 0.879 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.391 0.609 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -11.970 9.906 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.210 1.210 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.008 3.992 10 C 0.040 3.960 11 O -0.288 6.288 12 C -0.005 4.005 13 H 0.098 0.902 14 C -0.025 4.025 15 O -0.314 6.314 16 C -0.025 4.025 17 C -0.211 4.211 18 C 0.049 3.951 19 H 0.089 0.911 20 O -0.380 6.380 21 C -0.188 4.188 22 C -0.221 4.221 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.240 0.760 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.679 -11.345 9.767 15.208 hybrid contribution 0.525 0.784 -0.100 0.949 sum 3.204 -10.561 9.667 14.671 Atomic orbital electron populations 1.70100 1.06745 1.27264 1.50518 1.25589 0.95615 1.01621 0.94660 0.85723 0.79192 0.80445 0.77635 1.19675 1.20027 1.20988 1.20608 0.92534 0.90511 1.49475 0.93994 1.18893 0.99608 0.94357 0.86385 1.21978 0.88395 0.95724 0.89909 1.88098 1.33987 1.79402 1.27310 1.22876 0.96974 0.94498 0.86137 0.90241 1.22787 1.00073 0.94822 0.84787 1.87882 1.37597 1.68952 1.36975 1.22825 0.90112 0.93267 0.96320 1.22883 1.04241 0.98955 0.95043 1.21928 0.86042 0.90996 0.96118 0.91071 1.86668 1.25461 1.39111 1.86804 1.22455 0.93783 1.01165 1.01422 1.22992 0.97259 0.96586 1.05301 0.93145 0.94440 0.95697 0.90556 0.93637 0.86136 0.92912 0.89108 0.86613 0.75954 0.90145 0.91750 0.90516 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.08 12.94 21.45 0.28 -52.80 16 2 C 0.02 1.41 5.38 84.66 0.46 1.87 16 3 Si 0.94 45.52 29.55 68.60 2.03 47.55 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.49 -28.63 8.66 25.60 0.22 -28.41 16 8 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 9 C 0.01 0.41 1.63 -52.93 -0.09 0.32 16 10 C 0.12 5.52 5.62 71.98 0.40 5.92 16 11 O -0.37 -16.85 9.67 -137.97 -1.33 -18.18 16 12 C 0.05 1.90 2.58 30.68 0.08 1.98 16 13 H 0.08 2.57 7.77 -2.38 -0.02 2.55 16 14 C 0.05 1.94 6.27 72.01 0.45 2.39 16 15 O -0.39 -12.41 10.76 -148.98 -1.60 -14.01 16 16 C 0.05 1.12 6.69 72.01 0.48 1.60 16 17 C -0.17 -3.19 5.83 30.68 0.18 -3.01 16 18 C 0.11 2.91 3.51 30.71 0.11 3.02 16 19 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 20 O -0.57 -16.78 12.14 -137.97 -1.67 -18.45 16 21 C -0.15 -7.13 9.47 30.62 0.29 -6.84 16 22 C -0.18 -8.13 9.95 30.62 0.30 -7.82 16 23 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 24 H 0.04 1.56 7.96 -2.39 -0.02 1.54 16 25 H 0.02 1.30 7.82 -2.38 -0.02 1.28 16 26 H 0.08 3.05 7.82 -2.39 -0.02 3.03 16 27 H 0.05 1.85 7.82 -2.39 -0.02 1.83 16 28 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.39 6.88 9.09 -74.06 -0.67 6.21 16 33 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 34 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -69.18 299.36 0.97 -68.21 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.39 Total: 16.65 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 2.89 Total: -28.96 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.28 Total: -52.80 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -4.61 Total: -50.65 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -69.18 0.97 -68.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686570739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.155 kcal (2) G-P(sol) polarization free energy of solvation -69.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds