Wall clock time and date at job start Mon Mar 30 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.33951 * 125.40861 * 90.02443 * 12 11 10 14 14 O 1.21587 * 123.04024 * 0.02562 * 13 12 11 15 15 N 1.33948 * 113.91498 * 180.02562 * 13 12 11 16 16 C 1.47056 * 109.17787 * 0.02562 * 15 13 12 17 17 C 1.47048 * 125.41151 * 269.72094 * 12 11 10 18 18 H 1.09005 * 110.54925 * 61.40533 * 17 12 11 19 19 C 1.50701 * 110.55073 * 298.59557 * 17 12 11 20 20 O 1.20825 * 119.99611 * 359.97438 * 19 17 12 21 21 O 1.34230 * 120.00262 * 180.02562 * 19 17 12 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 0.96997 * 125.40572 * 179.97438 * 15 13 12 30 30 H 1.09000 * 110.54728 * 118.59988 * 16 15 13 31 31 H 1.09007 * 110.54254 * 241.25898 * 16 15 13 32 32 H 0.96694 * 117.00252 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 2.9363 -6.6903 1.0939 14 8 2.6453 -6.3508 2.2246 15 7 3.7898 -7.6877 0.8275 16 6 3.9189 -7.8368 -0.6297 17 6 2.9817 -6.7527 -1.1963 18 1 3.5461 -6.0384 -1.7959 19 6 1.8785 -7.3754 -2.0125 20 8 0.7317 -7.2920 -1.6413 21 8 2.1699 -8.0236 -3.1512 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 4.2501 -8.2256 1.4906 30 1 4.9482 -7.6610 -0.9426 31 1 3.5885 -8.8270 -0.9437 32 1 1.4289 -8.4061 -3.6406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690650108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:57 Heat of formation + Delta-G solvation = -109.674205 kcal Electronic energy + Delta-G solvation = -17487.024973 eV Core-core repulsion = 14448.070217 eV Total energy + Delta-G solvation = -3038.954756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54115 -39.82926 -36.51628 -36.14606 -35.15750 -33.16254 -31.26220 -29.72097 -26.79562 -24.72696 -23.53760 -21.90103 -20.66285 -19.75755 -18.37739 -17.73840 -17.27630 -16.38080 -16.09204 -15.69585 -15.20998 -14.53236 -14.25775 -14.18055 -13.69328 -13.60864 -13.16558 -12.70348 -12.29348 -11.98346 -11.73149 -11.29466 -10.94892 -10.81876 -10.73796 -10.57808 -10.12102 -9.66943 -9.52959 -9.32991 -9.14547 -8.46674 -8.31100 -5.96029 -3.98486 1.89733 2.36449 2.68114 3.31583 3.36206 3.40398 3.43136 3.80181 3.93105 4.49315 4.64167 4.75422 4.96397 5.24238 5.31187 5.39651 5.92907 6.00401 6.15273 6.26074 6.51638 6.66721 6.98640 7.01911 7.12941 7.49630 7.63046 7.69920 7.84883 8.03201 8.45411 8.63610 9.07735 9.65098 11.15330 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.005374 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.449925 B = 5209.200333 C = 5616.586912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.125 4.125 11 C 0.147 3.853 12 N -0.605 5.605 13 C 0.700 3.300 14 O -0.570 6.570 15 N -0.747 5.747 16 C 0.110 3.890 17 C 0.130 3.870 18 H 0.133 0.867 19 C 0.468 3.532 20 O -0.489 6.489 21 O -0.515 6.515 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.431 0.569 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.188 -18.693 -6.747 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.164 4.164 11 C 0.028 3.972 12 N -0.343 5.343 13 C 0.400 3.600 14 O -0.447 6.447 15 N -0.411 5.411 16 C -0.016 4.016 17 C 0.022 3.978 18 H 0.150 0.850 19 C 0.306 3.694 20 O -0.375 6.375 21 O -0.327 6.327 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.730 -18.050 -5.836 20.484 hybrid contribution 0.116 0.422 -0.305 0.533 sum 7.846 -17.628 -6.141 20.249 Atomic orbital electron populations 1.69954 1.06043 1.26709 1.50753 1.25021 0.94850 0.99228 0.95348 0.86646 0.79564 0.83130 0.78578 1.20304 1.21285 1.20226 1.21175 0.92957 0.90960 1.50697 0.92766 1.19035 0.93901 0.90982 0.97468 1.22055 0.99842 0.93645 1.00815 1.21718 0.89327 0.82653 1.03548 1.47354 1.48402 1.35524 1.03057 1.15888 0.79483 0.79740 0.84863 1.90994 1.65202 1.67868 1.20587 1.45149 1.50063 1.38490 1.07361 1.22160 0.99950 0.98024 0.81429 1.21353 0.91226 0.95807 0.89401 0.84990 1.23722 0.90390 0.75745 0.79506 1.90788 1.22369 1.55046 1.69247 1.84489 1.45222 1.66913 1.36065 0.92937 0.96488 0.96209 0.93364 0.92655 0.89721 0.90189 0.72740 0.88247 0.89623 0.72780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.68 5.48 -26.73 -0.15 -2.82 16 11 C 0.15 2.78 5.48 -4.04 -0.02 2.76 16 12 N -0.61 -9.57 2.43 -172.57 -0.42 -9.99 16 13 C 0.70 11.61 8.60 -88.40 -0.76 10.85 16 14 O -0.57 -12.15 17.53 5.29 0.09 -12.06 16 15 N -0.75 -8.10 6.37 -64.70 -0.41 -8.52 16 16 C 0.11 0.83 7.71 -3.16 -0.02 0.80 16 17 C 0.13 1.40 3.96 -68.21 -0.27 1.13 16 18 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.47 5.19 7.36 36.01 0.27 5.45 16 20 O -0.49 -7.48 15.81 -18.75 -0.30 -7.78 16 21 O -0.51 -3.68 13.42 -39.26 -0.53 -4.21 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.74 7.91 -51.93 -0.41 1.33 16 28 H 0.08 1.47 6.96 -51.93 -0.36 1.11 16 29 H 0.43 3.64 8.96 -40.82 -0.37 3.27 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.49 7.72 -51.92 -0.40 0.09 16 32 H 0.41 1.42 9.10 45.56 0.41 1.84 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -37.70 283.41 -6.29 -43.99 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.20 Total: -0.88 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.51 Total: 4.86 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.10 Total: -45.21 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.73 Total: -24.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -37.70 -6.29 -43.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690650108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.685 kcal (2) G-P(sol) polarization free energy of solvation -37.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds