Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.33951 * 125.40861 * 90.02443 * 12 11 10 14 14 O 1.21587 * 123.04024 * 0.02562 * 13 12 11 15 15 N 1.33948 * 113.91498 * 180.02562 * 13 12 11 16 16 C 1.47056 * 109.17787 * 0.02562 * 15 13 12 17 17 C 1.47048 * 125.41151 * 269.72094 * 12 11 10 18 18 H 1.09005 * 110.54925 * 61.40533 * 17 12 11 19 19 C 1.50701 * 110.55073 * 298.59557 * 17 12 11 20 20 O 1.20825 * 119.99611 * 359.97438 * 19 17 12 21 21 O 1.34230 * 120.00262 * 180.02562 * 19 17 12 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 0.96997 * 125.40572 * 179.97438 * 15 13 12 30 30 H 1.09000 * 110.54728 * 118.59988 * 16 15 13 31 31 H 1.09007 * 110.54254 * 241.25898 * 16 15 13 32 32 H 0.96694 * 117.00252 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 2.9363 -6.6903 1.0939 14 8 2.6453 -6.3508 2.2246 15 7 3.7898 -7.6877 0.8275 16 6 3.9189 -7.8368 -0.6297 17 6 2.9817 -6.7527 -1.1963 18 1 3.5461 -6.0384 -1.7959 19 6 1.8785 -7.3754 -2.0125 20 8 0.7317 -7.2920 -1.6413 21 8 2.1699 -8.0236 -3.1512 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 4.2501 -8.2256 1.4906 30 1 4.9482 -7.6610 -0.9426 31 1 3.5885 -8.8270 -0.9437 32 1 1.4289 -8.4061 -3.6406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690650108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -139.992405 kcal Electronic energy + Delta-G solvation = -17488.339669 eV Core-core repulsion = 14448.070217 eV Total energy + Delta-G solvation = -3040.269452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.56682 -40.77462 -37.61223 -37.13898 -36.71099 -34.99531 -32.97372 -30.82316 -28.61871 -25.59565 -25.32605 -22.81140 -22.45031 -21.09963 -19.20496 -18.85237 -18.39730 -18.15792 -17.26526 -16.72840 -16.56104 -16.21200 -15.79846 -15.26973 -15.09640 -14.61949 -14.41642 -14.14728 -13.63081 -13.43760 -13.14648 -12.77151 -12.65056 -12.51017 -12.47989 -11.90512 -11.66216 -11.53800 -11.36756 -11.31267 -10.55647 -10.43415 -9.68388 -8.19759 -6.31781 1.06299 1.33944 1.40363 1.44248 1.52129 1.74336 2.17945 2.41768 2.91007 3.13109 3.17349 3.73514 3.98260 4.18495 4.34061 4.42888 4.52177 4.62930 4.71229 4.89435 5.02588 5.15501 5.45544 5.54898 5.58043 5.68846 5.82307 6.11075 6.22928 6.39105 6.83860 6.92918 7.37316 7.45337 8.92107 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.005374 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.449925 B = 5209.200333 C = 5616.586912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.104 4.104 11 C 0.164 3.836 12 N -0.614 5.614 13 C 0.688 3.312 14 O -0.632 6.632 15 N -0.728 5.728 16 C 0.116 3.884 17 C 0.119 3.881 18 H 0.159 0.841 19 C 0.477 3.523 20 O -0.541 6.541 21 O -0.494 6.494 22 H 0.264 0.736 23 H 0.001 0.999 24 H -0.014 1.014 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.443 0.557 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 -19.549 -8.561 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.042 3.958 12 N -0.351 5.351 13 C 0.388 3.612 14 O -0.513 6.513 15 N -0.391 5.391 16 C -0.008 4.008 17 C 0.013 3.987 18 H 0.176 0.824 19 C 0.318 3.682 20 O -0.430 6.430 21 O -0.308 6.308 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.004 0.996 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.287 0.713 30 H 0.162 0.838 31 H 0.131 0.869 32 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 10.356 -18.989 -7.725 22.968 hybrid contribution -0.682 0.585 0.168 0.914 sum 9.675 -18.404 -7.556 22.123 Atomic orbital electron populations 1.70099 1.07901 1.27932 1.51483 1.26024 0.95796 1.03514 0.94598 0.85454 0.78235 0.77820 0.79246 1.18628 1.20766 1.19495 1.21616 0.93542 0.92157 1.50867 0.92064 1.18927 0.94331 0.92873 0.95012 1.21757 0.98543 0.93109 1.00866 1.21173 0.89392 0.82924 1.02305 1.47102 1.47879 1.34944 1.05198 1.16226 0.80147 0.80717 0.84063 1.90941 1.67381 1.69934 1.23014 1.45042 1.48051 1.36435 1.09591 1.22579 1.01545 0.98120 0.78557 1.21849 0.91521 0.97230 0.88139 0.82388 1.23712 0.89485 0.75044 0.79939 1.90792 1.24332 1.57208 1.70686 1.84435 1.45923 1.65909 1.34494 0.92704 0.98092 0.99599 0.91275 0.94238 0.92700 0.89806 0.71266 0.83821 0.86945 0.70559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.10 -4.55 5.48 30.59 0.17 -4.38 16 11 C 0.16 6.40 5.48 86.38 0.47 6.87 16 12 N -0.61 -19.11 2.43 -818.60 -1.99 -21.10 16 13 C 0.69 22.66 8.60 179.57 1.54 24.20 16 14 O -0.63 -27.94 17.53 -3.99 -0.07 -28.01 16 15 N -0.73 -14.01 6.37 -477.33 -3.04 -17.05 16 16 C 0.12 1.22 7.71 86.65 0.67 1.89 16 17 C 0.12 2.21 3.96 44.51 0.18 2.39 16 18 H 0.16 2.15 8.14 -2.38 -0.02 2.14 16 19 C 0.48 9.44 7.36 71.24 0.52 9.97 16 20 O -0.54 -16.23 15.81 21.97 0.35 -15.88 16 21 O -0.49 -5.24 13.42 -51.41 -0.69 -5.93 16 22 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 2.44 7.91 -2.39 -0.02 2.42 16 28 H 0.08 3.19 6.96 -2.39 -0.02 3.17 16 29 H 0.44 6.39 8.96 -92.71 -0.83 5.56 16 30 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.70 7.72 -2.38 -0.02 0.68 16 32 H 0.43 1.54 9.10 -74.06 -0.67 0.87 16 Total: -1.00 -86.14 283.41 0.92 -85.22 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -0.35 Total: 2.60 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.40 Total: 11.18 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -4.75 Total: -96.32 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.41 Total: -49.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -86.14 0.92 -85.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690650108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.771 kcal (2) G-P(sol) polarization free energy of solvation -86.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds