Wall clock time and date at job start Mon Mar 30 2020 04:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46737 * 2 1 4 4 H 1.09002 * 109.46641 * 185.16883 * 3 2 1 5 5 C 1.50702 * 109.47045 * 305.16477 * 3 2 1 6 6 H 1.08003 * 119.99169 * 114.81349 * 5 3 2 7 7 C 1.37868 * 120.00305 * 294.81277 * 5 3 2 8 8 N 1.31511 * 120.00037 * 4.55920 * 7 5 3 9 9 Si 1.86797 * 120.00269 * 184.55964 * 7 5 3 10 10 H 1.48504 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47282 * 119.99824 * 9 7 5 12 12 H 1.48494 * 109.47568 * 239.99930 * 9 7 5 13 13 C 1.53002 * 109.47177 * 65.17037 * 3 2 1 14 14 C 1.50692 * 109.48962 * 53.44933 * 13 3 2 15 15 O 1.20825 * 119.99984 * 94.10384 * 14 13 3 16 16 O 1.34229 * 120.00234 * 274.09355 * 14 13 3 17 17 C 1.53095 * 109.47918 * 173.47953 * 13 3 2 18 18 C 1.53172 * 109.16023 * 177.58612 * 17 13 3 19 19 C 1.53179 * 109.04927 * 303.02549 * 18 17 13 20 20 C 1.53083 * 109.15932 * 56.96490 * 19 18 17 21 21 O 1.42900 * 109.42724 * 302.40654 * 20 19 18 22 22 H 1.08996 * 109.46826 * 177.49287 * 1 2 3 23 23 H 1.08999 * 109.47532 * 297.49759 * 1 2 3 24 24 H 1.09001 * 109.47075 * 57.49554 * 1 2 3 25 25 H 1.08998 * 109.47318 * 239.99919 * 2 1 3 26 26 H 1.08995 * 109.47008 * 119.99508 * 2 1 3 27 27 H 0.97001 * 120.00206 * 180.02562 * 8 7 5 28 28 H 0.96698 * 117.00016 * 179.97438 * 16 14 13 29 29 H 1.08999 * 109.52499 * 297.49842 * 17 13 3 30 30 H 1.09001 * 109.52227 * 57.62153 * 17 13 3 31 31 H 1.09005 * 109.54211 * 62.89381 * 18 17 13 32 32 H 1.09009 * 109.54272 * 183.05968 * 18 17 13 33 33 H 1.08995 * 109.51400 * 297.06210 * 19 18 17 34 34 H 1.09005 * 109.52674 * 176.87456 * 19 18 17 35 35 H 1.09008 * 109.48109 * 182.41777 * 20 19 18 36 36 H 1.09007 * 109.48555 * 62.39801 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1260 1.4439 -0.0926 5 6 1.4358 2.1889 -1.1615 6 1 0.7594 3.0114 -0.9817 7 6 1.7467 1.8217 -2.4536 8 7 2.4982 0.7653 -2.6742 9 14 1.1003 2.8247 -3.8908 10 1 0.2853 3.9555 -3.3785 11 1 2.2425 3.3551 -4.6778 12 1 0.2597 1.9614 -4.7587 13 6 1.6388 2.1253 1.3092 14 6 2.1060 1.2919 2.4745 15 8 3.1702 1.5261 2.9965 16 8 1.3399 0.2896 2.9328 17 6 2.2850 3.5113 1.3810 18 6 1.8307 4.2119 2.6651 19 6 0.3006 4.2823 2.6816 20 6 -0.2689 2.8666 2.5593 21 8 0.2171 2.2609 1.3598 22 1 -0.3633 -1.0267 -0.0450 23 1 -0.3634 0.4745 0.9115 24 1 -0.3633 0.5522 -0.8667 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.7172 0.5072 -3.5832 28 1 1.6819 -0.2172 3.6819 29 1 3.3701 3.4075 1.3869 30 1 1.9803 4.1006 0.5161 31 1 2.1791 3.6484 3.5307 32 1 2.2438 5.2202 2.6961 33 1 -0.0451 4.8877 1.8438 34 1 -0.0334 4.7298 3.6178 35 1 -1.3574 2.9142 2.5273 36 1 0.0439 2.2734 3.4186 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691809427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:43 Heat of formation + Delta-G solvation = -149.944954 kcal Electronic energy + Delta-G solvation = -19575.471320 eV Core-core repulsion = 16638.310637 eV Total energy + Delta-G solvation = -2937.160683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62121 -38.07202 -35.72002 -34.96075 -33.08117 -31.61679 -30.19735 -26.81619 -25.51846 -23.57614 -23.01739 -21.79688 -19.47226 -19.03602 -17.74732 -16.85984 -15.89950 -15.47850 -15.11553 -14.44277 -14.18037 -13.88873 -13.56310 -13.11558 -12.94731 -12.54851 -12.18185 -11.95701 -11.66246 -11.25197 -11.03647 -10.95075 -10.80470 -10.62931 -10.51930 -10.36776 -10.33698 -9.97797 -9.78236 -9.49181 -9.18506 -8.81326 -8.50234 -8.33725 -5.98159 -4.00073 2.70650 3.32205 3.40580 3.44222 3.57206 4.38614 4.47072 5.15181 5.18055 5.26175 5.36319 5.42071 5.61350 5.85513 5.91153 6.00984 6.09735 6.25886 6.29835 6.44378 6.59669 6.64468 6.73669 6.78634 6.92133 6.97469 7.34149 7.47273 7.51019 7.77014 7.84317 7.90539 8.11039 8.38874 8.44415 9.00373 9.61269 11.09542 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.010394 C = 0.009148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.019683 B = 2693.339488 C = 3060.095267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C 0.062 3.938 4 H 0.045 0.955 5 C -0.489 4.489 6 H 0.066 0.934 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.146 3.854 14 C 0.467 3.533 15 O -0.528 6.528 16 O -0.503 6.503 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.156 4.156 20 C 0.044 3.956 21 O -0.321 6.321 22 H 0.010 0.990 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.014 0.986 27 H 0.259 0.741 28 H 0.390 0.610 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 3.009 9.664 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C 0.044 3.956 4 H 0.062 0.938 5 C -0.527 4.527 6 H 0.085 0.915 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.105 3.895 14 C 0.311 3.689 15 O -0.417 6.417 16 O -0.312 6.312 17 C -0.163 4.163 18 C -0.167 4.167 19 C -0.193 4.193 20 C -0.033 4.033 21 O -0.239 6.239 22 H 0.029 0.971 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.247 0.753 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.603 3.143 9.162 10.334 hybrid contribution 0.173 0.139 -0.020 0.223 sum -3.431 3.282 9.142 10.301 Atomic orbital electron populations 1.21736 0.96671 0.97384 1.02835 1.21537 0.96049 0.97795 0.99567 1.18951 0.96907 0.92580 0.87171 0.93753 1.20879 1.27051 1.15578 0.89192 0.91541 1.24914 0.95362 0.95034 0.98752 1.69922 1.37904 1.24564 1.20555 0.86543 0.78562 0.80342 0.82613 1.19688 1.21238 1.21207 1.21980 0.81988 0.92742 0.92755 1.25103 0.82247 0.78228 0.83369 1.90620 1.23928 1.69370 1.57831 1.84819 1.51763 1.44508 1.50151 1.22017 1.01279 0.94583 0.98374 1.21716 0.95298 1.00985 0.98677 1.22205 0.96467 0.98544 1.02111 1.22649 0.99341 0.92291 0.89019 1.88369 1.19292 1.79028 1.37173 0.97077 0.91899 0.92232 0.89917 0.96764 0.93096 0.75296 0.90435 0.88414 0.92313 0.91653 0.90760 0.91833 0.89122 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.94 37.16 0.33 -2.57 16 2 C -0.11 -2.67 5.07 -26.73 -0.14 -2.80 16 3 C 0.06 1.51 1.59 -91.77 -0.15 1.37 16 4 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.49 -12.64 5.76 -34.44 -0.20 -12.83 16 6 H 0.07 1.73 7.04 -52.48 -0.37 1.36 16 7 C 0.06 1.61 5.36 -17.82 -0.10 1.52 16 8 N -0.89 -24.86 11.59 55.43 0.64 -24.22 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.15 3.02 0.39 -91.73 -0.04 2.98 16 14 C 0.47 9.14 4.24 36.00 0.15 9.29 16 15 O -0.53 -11.07 15.95 -18.75 -0.30 -11.37 16 16 O -0.50 -8.37 10.66 -44.49 -0.47 -8.85 16 17 C -0.13 -2.38 4.44 -26.59 -0.12 -2.50 16 18 C -0.13 -2.03 5.75 -26.55 -0.15 -2.19 16 19 C -0.16 -2.21 6.14 -26.60 -0.16 -2.38 16 20 C 0.04 0.69 6.50 37.20 0.24 0.93 16 21 O -0.32 -6.34 5.94 -49.39 -0.29 -6.63 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.06 1.35 5.19 -51.93 -0.27 1.08 16 24 H 0.06 1.45 6.97 -51.93 -0.36 1.08 16 25 H 0.08 2.20 6.45 -51.93 -0.34 1.87 16 26 H 0.01 0.31 6.01 -51.93 -0.31 0.00 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.39 4.54 9.10 45.56 0.41 4.96 16 29 H 0.08 1.52 7.78 -51.93 -0.40 1.12 16 30 H 0.10 1.92 7.12 -51.93 -0.37 1.55 16 31 H 0.06 0.96 6.75 -51.93 -0.35 0.61 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.04 0.64 6.54 -51.93 -0.34 0.30 16 LS Contribution 275.29 15.07 4.15 4.15 Total: -1.00 -29.41 275.29 -5.98 -35.40 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.37 Total: 4.81 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.32 Total: -9.17 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.64 Total: -24.22 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.07 Total: -26.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.41 -5.98 -35.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.549 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds