Wall clock time and date at job start Mon Mar 30 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46737 * 2 1 4 4 H 1.09002 * 109.46641 * 185.16883 * 3 2 1 5 5 C 1.50702 * 109.47045 * 305.16477 * 3 2 1 6 6 H 1.08003 * 119.99169 * 114.81349 * 5 3 2 7 7 C 1.37868 * 120.00305 * 294.81277 * 5 3 2 8 8 N 1.31511 * 120.00037 * 4.55920 * 7 5 3 9 9 Si 1.86797 * 120.00269 * 184.55964 * 7 5 3 10 10 H 1.48504 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47282 * 119.99824 * 9 7 5 12 12 H 1.48494 * 109.47568 * 239.99930 * 9 7 5 13 13 C 1.53002 * 109.47177 * 65.17037 * 3 2 1 14 14 C 1.50692 * 109.48962 * 53.44933 * 13 3 2 15 15 O 1.20825 * 119.99984 * 94.10384 * 14 13 3 16 16 O 1.34229 * 120.00234 * 274.09355 * 14 13 3 17 17 C 1.53095 * 109.47918 * 173.47953 * 13 3 2 18 18 C 1.53172 * 109.16023 * 177.58612 * 17 13 3 19 19 C 1.53179 * 109.04927 * 303.02549 * 18 17 13 20 20 C 1.53083 * 109.15932 * 56.96490 * 19 18 17 21 21 O 1.42900 * 109.42724 * 302.40654 * 20 19 18 22 22 H 1.08996 * 109.46826 * 177.49287 * 1 2 3 23 23 H 1.08999 * 109.47532 * 297.49759 * 1 2 3 24 24 H 1.09001 * 109.47075 * 57.49554 * 1 2 3 25 25 H 1.08998 * 109.47318 * 239.99919 * 2 1 3 26 26 H 1.08995 * 109.47008 * 119.99508 * 2 1 3 27 27 H 0.97001 * 120.00206 * 180.02562 * 8 7 5 28 28 H 0.96698 * 117.00016 * 179.97438 * 16 14 13 29 29 H 1.08999 * 109.52499 * 297.49842 * 17 13 3 30 30 H 1.09001 * 109.52227 * 57.62153 * 17 13 3 31 31 H 1.09005 * 109.54211 * 62.89381 * 18 17 13 32 32 H 1.09009 * 109.54272 * 183.05968 * 18 17 13 33 33 H 1.08995 * 109.51400 * 297.06210 * 19 18 17 34 34 H 1.09005 * 109.52674 * 176.87456 * 19 18 17 35 35 H 1.09008 * 109.48109 * 182.41777 * 20 19 18 36 36 H 1.09007 * 109.48555 * 62.39801 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1260 1.4439 -0.0926 5 6 1.4358 2.1889 -1.1615 6 1 0.7594 3.0114 -0.9817 7 6 1.7467 1.8217 -2.4536 8 7 2.4982 0.7653 -2.6742 9 14 1.1003 2.8247 -3.8908 10 1 0.2853 3.9555 -3.3785 11 1 2.2425 3.3551 -4.6778 12 1 0.2597 1.9614 -4.7587 13 6 1.6388 2.1253 1.3092 14 6 2.1060 1.2919 2.4745 15 8 3.1702 1.5261 2.9965 16 8 1.3399 0.2896 2.9328 17 6 2.2850 3.5113 1.3810 18 6 1.8307 4.2119 2.6651 19 6 0.3006 4.2823 2.6816 20 6 -0.2689 2.8666 2.5593 21 8 0.2171 2.2609 1.3598 22 1 -0.3633 -1.0267 -0.0450 23 1 -0.3634 0.4745 0.9115 24 1 -0.3633 0.5522 -0.8667 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.7172 0.5072 -3.5832 28 1 1.6819 -0.2172 3.6819 29 1 3.3701 3.4075 1.3869 30 1 1.9803 4.1006 0.5161 31 1 2.1791 3.6484 3.5307 32 1 2.2438 5.2202 2.6961 33 1 -0.0451 4.8877 1.8438 34 1 -0.0334 4.7298 3.6178 35 1 -1.3574 2.9142 2.5273 36 1 0.0439 2.2734 3.4186 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691809427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:42 Heat of formation + Delta-G solvation = -168.094392 kcal Electronic energy + Delta-G solvation = -19576.258339 eV Core-core repulsion = 16638.310637 eV Total energy + Delta-G solvation = -2937.947702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.13927 -39.53736 -37.18952 -36.74750 -34.46946 -33.53397 -31.79769 -28.55353 -27.22247 -25.05325 -24.72509 -23.30252 -21.11567 -20.58349 -19.24235 -18.52330 -17.48903 -17.30557 -16.58517 -16.23425 -15.56116 -15.23186 -15.09409 -14.63369 -14.62371 -14.28701 -13.90611 -13.60273 -13.14897 -12.84451 -12.78777 -12.64461 -12.42770 -12.23836 -12.10931 -11.98483 -11.87478 -11.60711 -11.44797 -11.28526 -10.89051 -10.67471 -10.39568 -10.06137 -8.02739 -6.09632 1.15600 1.44855 1.48099 1.58476 2.14329 2.51434 2.91946 3.30162 3.80715 3.93741 4.02440 4.08935 4.29752 4.49030 4.57572 4.68663 4.74465 4.84713 4.87187 4.94464 5.01775 5.07125 5.16862 5.23567 5.39018 5.45845 5.55925 5.56876 5.63128 5.87115 5.95715 6.08163 6.29905 6.47284 6.95354 7.05130 7.54226 9.04647 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.010394 C = 0.009148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.019683 B = 2693.339488 C = 3060.095267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.106 4.106 3 C 0.060 3.940 4 H 0.006 0.994 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.149 3.851 14 C 0.473 3.527 15 O -0.546 6.546 16 O -0.497 6.497 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.150 4.150 20 C 0.035 3.965 21 O -0.340 6.340 22 H 0.025 0.975 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.258 0.742 28 H 0.415 0.585 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 3.941 11.065 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.144 4.144 3 C 0.041 3.959 4 H 0.024 0.976 5 C -0.523 4.523 6 H 0.083 0.917 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.108 3.892 14 C 0.317 3.683 15 O -0.437 6.437 16 O -0.309 6.309 17 C -0.164 4.164 18 C -0.161 4.161 19 C -0.187 4.187 20 C -0.042 4.042 21 O -0.259 6.259 22 H 0.044 0.956 23 H 0.095 0.905 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.276 0.724 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.162 4.068 10.590 12.463 hybrid contribution 0.640 -0.197 -0.380 0.770 sum -4.522 3.871 10.209 11.818 Atomic orbital electron populations 1.21590 0.95208 0.98088 1.02407 1.21421 0.97190 0.97344 0.98458 1.18770 0.94542 0.93282 0.89271 0.97597 1.21046 1.26310 1.15149 0.89807 0.91735 1.25627 0.95846 0.95949 1.01205 1.70057 1.39346 1.26032 1.20787 0.85633 0.77948 0.79161 0.79709 1.18710 1.21213 1.21297 1.21592 0.83050 0.93282 0.91308 1.24763 0.81933 0.78547 0.83063 1.90616 1.24585 1.70002 1.58490 1.84728 1.51171 1.43804 1.51240 1.21969 1.00192 0.94241 0.99997 1.21683 0.96744 1.01455 0.96173 1.22188 0.94873 0.97801 1.03863 1.22972 1.00714 0.92944 0.87535 1.88288 1.18218 1.79879 1.39495 0.95597 0.90481 0.94557 0.93188 0.95665 0.93332 0.72421 0.92126 0.89652 0.92809 0.89635 0.90839 0.88478 0.86693 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.94 71.98 0.64 -4.46 16 2 C -0.11 -5.12 5.07 30.60 0.15 -4.97 16 3 C 0.06 2.97 1.59 -11.54 -0.02 2.95 16 4 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 5 C -0.48 -25.42 5.76 25.60 0.15 -25.27 16 6 H 0.06 3.35 7.04 -2.91 -0.02 3.33 16 7 C 0.01 0.63 5.36 84.65 0.45 1.08 16 8 N -0.92 -52.95 11.59 21.44 0.25 -52.70 16 9 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.15 6.07 0.39 -11.51 0.00 6.06 16 14 C 0.47 17.94 4.24 71.23 0.30 18.24 16 15 O -0.55 -22.43 15.95 21.97 0.35 -22.08 16 16 O -0.50 -15.38 10.66 -46.40 -0.49 -15.88 16 17 C -0.13 -4.77 4.44 30.68 0.14 -4.64 16 18 C -0.12 -3.60 5.75 30.71 0.18 -3.42 16 19 C -0.15 -3.74 6.14 30.68 0.19 -3.55 16 20 C 0.03 0.97 6.50 72.01 0.47 1.44 16 21 O -0.34 -12.86 5.94 -135.44 -0.80 -13.66 16 22 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.08 3.16 5.19 -2.39 -0.01 3.15 16 24 H 0.04 1.74 6.97 -2.39 -0.02 1.72 16 25 H 0.05 2.73 6.45 -2.39 -0.02 2.72 16 26 H 0.02 1.12 6.01 -2.39 -0.01 1.11 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.42 8.45 9.10 -74.06 -0.67 7.78 16 29 H 0.06 2.44 7.78 -2.39 -0.02 2.42 16 30 H 0.08 3.37 7.12 -2.39 -0.02 3.36 16 31 H 0.05 1.64 6.75 -2.38 -0.02 1.62 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.05 1.30 6.54 -2.38 -0.02 1.28 16 Total: -1.00 -63.64 275.29 4.39 -59.25 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.41 Total: 16.34 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 2.65 Total: -16.54 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.25 Total: -52.70 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.95 Total: -51.62 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.64 4.39 -59.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.841 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds