Wall clock time and date at job start Mon Mar 30 2020 04:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 H 1.09004 * 109.46936 * 53.17512 * 3 2 1 5 5 C 1.50695 * 109.47149 * 173.17291 * 3 2 1 6 6 H 1.08007 * 120.00028 * 114.32527 * 5 3 2 7 7 C 1.37880 * 120.00601 * 294.32864 * 5 3 2 8 8 N 1.31516 * 119.99468 * 4.29523 * 7 5 3 9 9 Si 1.86797 * 120.00372 * 184.29667 * 7 5 3 10 10 H 1.48505 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47089 * 119.99947 * 9 7 5 12 12 H 1.48501 * 109.47098 * 239.99997 * 9 7 5 13 13 C 1.52993 * 109.47159 * 293.17848 * 3 2 1 14 14 C 1.50708 * 109.47837 * 305.20169 * 13 3 2 15 15 O 1.20820 * 120.00101 * 264.67478 * 14 13 3 16 16 O 1.34229 * 119.99678 * 84.94771 * 14 13 3 17 17 C 1.53094 * 109.48379 * 185.18473 * 13 3 2 18 18 C 1.53173 * 109.16573 * 182.39573 * 17 13 3 19 19 C 1.53175 * 109.03662 * 56.97847 * 18 17 13 20 20 C 1.53096 * 109.16175 * 303.01753 * 19 18 17 21 21 O 1.42893 * 109.41293 * 57.61193 * 20 19 18 22 22 H 1.08995 * 109.47383 * 68.15691 * 1 2 3 23 23 H 1.09004 * 109.46846 * 188.15511 * 1 2 3 24 24 H 1.08997 * 109.46892 * 308.14975 * 1 2 3 25 25 H 1.08998 * 109.47694 * 240.00329 * 2 1 3 26 26 H 1.09004 * 109.47685 * 120.00143 * 2 1 3 27 27 H 0.97000 * 119.99595 * 179.97438 * 8 7 5 28 28 H 0.96697 * 116.99924 * 179.72406 * 16 14 13 29 29 H 1.09006 * 109.51776 * 302.30217 * 17 13 3 30 30 H 1.09005 * 109.52165 * 62.48236 * 17 13 3 31 31 H 1.09001 * 109.54083 * 176.84320 * 18 17 13 32 32 H 1.08999 * 109.54318 * 297.10916 * 18 17 13 33 33 H 1.08997 * 109.52575 * 62.92500 * 19 18 17 34 34 H 1.09005 * 109.52389 * 183.11733 * 19 18 17 35 35 H 1.09003 * 109.47888 * 177.59417 * 20 19 18 36 36 H 1.09004 * 109.48178 * 297.61599 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 1.9904 0.8227 5 6 3.5374 1.4459 0.1689 6 1 4.1704 1.7984 -0.6321 7 6 4.0996 0.9991 1.3459 8 7 3.3355 0.4914 2.2883 9 14 5.9463 1.1148 1.6021 10 1 6.5756 1.7200 0.4008 11 1 6.2293 1.9618 2.7885 12 1 6.5018 -0.2450 1.8206 13 6 1.6747 2.1126 -1.3260 14 6 2.2022 1.2847 -2.4695 15 8 3.2704 1.5523 -2.9666 16 8 1.4828 0.2535 -2.9393 17 6 2.2953 3.5111 -1.3794 18 6 1.8759 4.1979 -2.6828 19 6 0.3465 4.2374 -2.7569 20 6 -0.1988 2.8109 -2.6504 21 8 0.2535 2.2193 -1.4309 22 1 -0.3634 0.3823 -0.9538 23 1 -0.3633 -1.0173 0.1458 24 1 -0.3633 0.6348 0.8081 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7310 0.1767 3.1162 28 1 1.8605 -0.2456 -3.6764 29 1 1.9455 4.0975 -0.5297 30 1 3.3817 3.4291 -1.3440 31 1 2.2683 5.2147 -2.7017 32 1 2.2679 3.6385 -3.5322 33 1 -0.0427 4.8385 -1.9352 34 1 0.0390 4.6749 -3.7069 35 1 -1.2885 2.8366 -2.6597 36 1 0.1580 2.2212 -3.4949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691809440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:50 Heat of formation + Delta-G solvation = -172.166967 kcal Electronic energy + Delta-G solvation = -19537.504705 eV Core-core repulsion = 16599.380402 eV Total energy + Delta-G solvation = -2938.124302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10932 -39.46631 -37.10933 -36.73486 -34.56056 -33.66873 -31.92369 -28.94701 -26.78989 -25.11259 -24.58787 -23.28744 -21.19684 -20.55441 -19.32555 -18.56005 -17.75833 -17.24728 -16.52852 -16.31048 -15.57539 -15.13705 -15.05571 -14.66734 -14.54621 -14.49373 -13.69422 -13.43429 -13.20067 -13.07038 -12.90610 -12.75541 -12.45005 -12.38997 -12.05235 -11.94908 -11.89258 -11.61188 -11.49316 -11.33213 -11.04336 -10.65325 -10.41199 -10.14833 -8.13683 -6.25221 1.30665 1.37506 1.40259 1.51652 2.21323 2.39638 2.91800 3.16001 3.80849 3.94370 4.02039 4.07847 4.33846 4.50598 4.59109 4.65576 4.70761 4.82278 4.88786 4.95883 5.01533 5.05336 5.15794 5.24398 5.32866 5.37895 5.51266 5.60332 5.67710 5.70901 5.86383 6.06738 6.21808 6.37113 6.83655 7.14140 7.42161 8.92482 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.010230 C = 0.009146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.075348 B = 2736.402996 C = 3060.657148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 C 0.067 3.933 4 H 0.023 0.977 5 C -0.530 4.530 6 H 0.055 0.945 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.281 1.281 13 C 0.148 3.852 14 C 0.484 3.516 15 O -0.542 6.542 16 O -0.503 6.503 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.150 4.150 20 C 0.038 3.962 21 O -0.359 6.359 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.262 0.738 28 H 0.413 0.587 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 4.165 -9.917 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.148 4.148 3 C 0.049 3.951 4 H 0.041 0.959 5 C -0.568 4.568 6 H 0.073 0.927 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.200 1.200 12 H -0.207 1.207 13 C 0.107 3.893 14 C 0.328 3.672 15 O -0.432 6.432 16 O -0.315 6.315 17 C -0.162 4.162 18 C -0.164 4.164 19 C -0.187 4.187 20 C -0.038 4.038 21 O -0.278 6.278 22 H 0.095 0.905 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.273 0.727 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.861 4.318 -9.405 12.417 hybrid contribution 1.692 -0.467 -0.147 1.762 sum -5.168 3.852 -9.552 11.523 Atomic orbital electron populations 1.21764 0.95738 0.99208 1.02022 1.21480 0.95152 0.98112 1.00023 1.18675 0.94842 0.93049 0.88544 0.95861 1.21401 0.91802 1.42928 1.00684 0.92675 1.25578 1.01708 0.94648 0.95867 1.70048 1.36329 1.41157 1.07144 0.85680 0.81180 0.77820 0.78090 1.19799 1.20041 1.20692 1.21622 0.81508 0.93551 0.92632 1.24335 0.82285 0.78552 0.82062 1.90598 1.23762 1.70251 1.58610 1.84684 1.52101 1.42669 1.52060 1.21942 1.01494 0.93510 0.99206 1.21719 0.96962 1.01468 0.96228 1.22208 0.94705 0.97672 1.04124 1.22964 1.01226 0.92970 0.86605 1.88149 1.19105 1.80947 1.39613 0.90545 0.94277 0.94947 0.94841 0.92836 0.92841 0.72684 0.90451 0.91471 0.89710 0.93043 0.90373 0.88399 0.86119 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.05 71.98 0.65 -4.69 16 2 C -0.11 -5.30 4.94 30.59 0.15 -5.15 16 3 C 0.07 3.37 1.43 -11.54 -0.02 3.36 16 4 H 0.02 1.29 8.11 -2.38 -0.02 1.27 16 5 C -0.53 -29.11 7.20 25.60 0.18 -28.93 16 6 H 0.06 3.12 5.77 -2.91 -0.02 3.10 16 7 C 0.02 1.21 5.34 84.66 0.45 1.66 16 8 N -0.91 -52.04 11.56 21.45 0.25 -51.79 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.15 6.14 0.52 -11.51 -0.01 6.13 16 14 C 0.48 19.62 3.79 71.24 0.27 19.89 16 15 O -0.54 -24.33 15.14 21.98 0.33 -23.99 16 16 O -0.50 -16.71 10.89 -46.48 -0.51 -17.22 16 17 C -0.12 -4.82 4.19 30.68 0.13 -4.69 16 18 C -0.13 -3.80 5.75 30.71 0.18 -3.62 16 19 C -0.15 -3.62 6.14 30.68 0.19 -3.43 16 20 C 0.04 1.04 6.51 72.01 0.47 1.51 16 21 O -0.36 -13.06 6.82 -135.74 -0.93 -13.99 16 22 H 0.08 2.93 5.81 -2.39 -0.01 2.91 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.03 1.35 8.10 -2.39 -0.02 1.33 16 25 H 0.03 1.58 5.87 -2.39 -0.01 1.57 16 26 H 0.05 2.93 6.25 -2.38 -0.01 2.91 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.41 9.60 9.10 -74.06 -0.67 8.92 16 29 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.07 2.97 6.17 -2.38 -0.01 2.95 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.66 6.71 -2.39 -0.02 1.64 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.05 1.24 6.58 -2.39 -0.02 1.22 16 Total: -1.00 -64.88 275.74 4.24 -60.64 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.41 Total: 17.94 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 2.65 Total: -17.97 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.25 Total: -51.79 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.10 Total: -55.20 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.88 4.24 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.529 kcal (2) G-P(sol) polarization free energy of solvation -64.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds