Wall clock time and date at job start Mon Mar 30 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.99704 * 3 2 1 6 6 H 1.48501 * 109.47363 * 59.99417 * 3 2 1 7 7 C 1.37875 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47306 * 60.00240 * 11 10 9 13 13 O 1.20819 * 120.00296 * 119.99340 * 12 11 10 14 14 O 1.34229 * 119.99505 * 300.00127 * 12 11 10 15 15 C 1.53000 * 109.47328 * 180.02562 * 11 10 9 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 11 10 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 11 18 18 O 1.42900 * 109.47616 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 17 16 21 21 H 0.97003 * 119.99476 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47161 * 59.99493 * 9 7 2 23 23 H 1.09001 * 109.46953 * 299.99721 * 9 7 2 24 24 H 1.09000 * 109.47140 * 59.99953 * 10 9 7 25 25 H 1.08992 * 109.47280 * 300.00101 * 10 9 7 26 26 H 0.96704 * 117.00003 * 179.97438 * 14 12 11 27 27 H 1.09002 * 109.47398 * 180.02562 * 15 11 10 28 28 H 1.09001 * 109.47194 * 300.00476 * 15 11 10 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 11 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 11 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 0.96700 * 113.99696 * 300.00309 * 18 17 16 33 33 H 1.09002 * 109.46935 * 299.99411 * 19 17 16 34 34 H 1.09001 * 109.46812 * 179.97438 * 19 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 20 19 17 36 36 H 1.09002 * 109.46695 * 59.99734 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 6 0.6133 -5.0673 -1.2290 13 8 0.7742 -5.9626 -2.0242 14 8 -0.3375 -4.1439 -1.4414 15 6 2.4743 -6.1500 0.0018 16 6 3.3538 -6.0684 1.2511 17 6 2.4741 -6.1488 2.5003 18 8 3.2956 -6.0731 3.6671 19 6 1.4799 -4.9858 2.4996 20 6 0.6003 -5.0674 1.2504 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8894 26 1 -0.8681 -4.2368 -2.2444 27 1 1.9292 -7.0940 0.0018 28 1 3.1010 -6.0928 -0.8881 29 1 4.0624 -6.8966 1.2514 30 1 3.8988 -5.1245 1.2507 31 1 1.9291 -7.0927 2.5007 32 1 3.9507 -6.7813 3.7334 33 1 2.0249 -4.0418 2.4992 34 1 0.8529 -5.0434 3.3894 35 1 -0.1082 -4.2392 1.2501 36 1 0.0554 -6.0114 1.2508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691824330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:35 Heat of formation + Delta-G solvation = -169.553352 kcal Electronic energy + Delta-G solvation = -18628.564308 eV Core-core repulsion = 15690.553340 eV Total energy + Delta-G solvation = -2938.010967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61082 -38.54159 -36.01513 -35.67244 -33.20499 -31.25355 -30.70781 -28.69172 -24.92975 -23.63364 -22.82216 -21.16720 -20.75758 -18.22298 -17.54658 -17.13498 -16.53498 -16.14111 -15.20696 -14.66064 -14.48226 -14.27778 -13.73103 -13.39564 -12.90729 -12.72057 -12.20976 -12.13311 -11.94002 -11.54716 -11.36513 -11.11971 -10.98152 -10.95617 -10.90445 -10.49141 -10.29793 -10.16790 -9.86298 -9.64438 -9.47651 -9.18646 -8.93105 -8.25919 -5.95367 -3.96508 2.67291 3.32575 3.40539 3.44374 3.52031 4.29572 4.48731 4.75649 4.84984 5.21437 5.27275 5.29592 5.40374 5.45038 5.53927 5.63409 5.66529 5.94390 6.06472 6.13562 6.14519 6.30556 6.34038 6.46657 6.51132 6.59914 6.75965 6.98334 7.10257 7.70665 7.77415 7.94507 8.10240 8.41416 8.47881 9.11694 9.66156 11.15245 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.008025 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.394285 B = 3488.203630 C = 4264.117615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.052 0.948 9 C 0.010 3.990 10 C -0.105 4.105 11 C -0.051 4.051 12 C 0.495 3.505 13 O -0.539 6.539 14 O -0.484 6.484 15 C -0.094 4.094 16 C -0.152 4.152 17 C 0.105 3.895 18 O -0.567 6.567 19 C -0.112 4.112 20 C -0.103 4.103 21 H 0.258 0.742 22 H 0.045 0.955 23 H 0.022 0.978 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.395 0.605 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.372 0.628 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -12.618 2.559 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.070 0.930 9 C -0.026 4.026 10 C -0.143 4.143 11 C -0.052 4.052 12 C 0.339 3.661 13 O -0.429 6.429 14 O -0.293 6.293 15 C -0.132 4.132 16 C -0.189 4.189 17 C 0.046 3.954 18 O -0.372 6.372 19 C -0.150 4.150 20 C -0.140 4.140 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.253 0.747 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.219 0.781 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.296 -12.157 2.817 12.689 hybrid contribution 0.453 0.393 -0.798 0.998 sum 2.750 -11.764 2.019 12.249 Atomic orbital electron populations 1.69983 1.05866 1.26198 1.51011 1.24974 0.94810 0.98979 0.95543 0.86629 0.80187 0.84216 0.77507 1.19849 1.21144 1.21091 1.21291 0.92913 0.91251 1.50323 0.92958 1.19458 0.93808 0.90290 0.99047 1.21875 0.99119 0.91753 1.01517 1.20722 0.94346 0.99639 0.90539 1.23504 0.78207 0.77367 0.87033 1.90626 1.69243 1.35612 1.47448 1.84956 1.45917 1.51010 1.47420 1.21372 0.96895 0.96936 0.97994 1.22318 0.98515 1.03266 0.94829 1.21886 0.91112 0.98471 0.83909 1.86552 1.51887 1.54644 1.44152 1.21488 0.96925 0.98974 0.97581 1.21548 0.97741 1.02913 0.91836 0.93236 0.93664 0.95975 0.91011 0.93056 0.74748 0.91638 0.90982 0.91807 0.90006 0.93169 0.78141 0.89430 0.91188 0.88591 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.01 0.26 4.10 -27.88 -0.11 0.14 16 10 C -0.11 -2.08 3.51 -26.73 -0.09 -2.17 16 11 C -0.05 -0.86 0.51 -155.66 -0.08 -0.94 16 12 C 0.49 8.89 6.86 36.01 0.25 9.13 16 13 O -0.54 -10.34 16.74 -18.74 -0.31 -10.65 16 14 O -0.48 -8.48 10.24 -39.25 -0.40 -8.88 16 15 C -0.09 -1.35 4.02 -26.73 -0.11 -1.46 16 16 C -0.15 -1.91 5.27 -26.73 -0.14 -2.05 16 17 C 0.10 1.34 3.47 -26.73 -0.09 1.25 16 18 O -0.57 -7.19 13.32 -35.23 -0.47 -7.66 16 19 C -0.11 -1.68 5.30 -26.73 -0.14 -1.82 16 20 C -0.10 -1.60 4.31 -26.73 -0.12 -1.72 16 21 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 22 H 0.05 1.17 5.32 -51.93 -0.28 0.90 16 23 H 0.02 0.57 6.43 -51.93 -0.33 0.24 16 24 H 0.07 1.38 4.81 -51.93 -0.25 1.13 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.39 5.07 9.10 45.56 0.41 5.48 16 27 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 28 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.14 6.43 -51.93 -0.33 0.81 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.37 2.97 9.08 45.56 0.41 3.38 16 33 H 0.09 1.51 6.43 -51.93 -0.33 1.18 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.69 6.40 -51.93 -0.33 1.36 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -32.65 283.32 -5.78 -38.42 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.53 Total: 6.28 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.05 Total: -12.82 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.19 Total: -27.20 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.65 -5.78 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691824330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.130 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds