Wall clock time and date at job start Mon Mar 30 2020 04:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.99704 * 3 2 1 6 6 H 1.48501 * 109.47363 * 59.99417 * 3 2 1 7 7 C 1.37875 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47306 * 60.00240 * 11 10 9 13 13 O 1.20819 * 120.00296 * 119.99340 * 12 11 10 14 14 O 1.34229 * 119.99505 * 300.00127 * 12 11 10 15 15 C 1.53000 * 109.47328 * 180.02562 * 11 10 9 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 11 10 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 11 18 18 O 1.42900 * 109.47616 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 17 16 21 21 H 0.97003 * 119.99476 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47161 * 59.99493 * 9 7 2 23 23 H 1.09001 * 109.46953 * 299.99721 * 9 7 2 24 24 H 1.09000 * 109.47140 * 59.99953 * 10 9 7 25 25 H 1.08992 * 109.47280 * 300.00101 * 10 9 7 26 26 H 0.96704 * 117.00003 * 179.97438 * 14 12 11 27 27 H 1.09002 * 109.47398 * 180.02562 * 15 11 10 28 28 H 1.09001 * 109.47194 * 300.00476 * 15 11 10 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 11 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 11 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 0.96700 * 113.99696 * 300.00309 * 18 17 16 33 33 H 1.09002 * 109.46935 * 299.99411 * 19 17 16 34 34 H 1.09001 * 109.46812 * 179.97438 * 19 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 20 19 17 36 36 H 1.09002 * 109.46695 * 59.99734 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 6 0.6133 -5.0673 -1.2290 13 8 0.7742 -5.9626 -2.0242 14 8 -0.3375 -4.1439 -1.4414 15 6 2.4743 -6.1500 0.0018 16 6 3.3538 -6.0684 1.2511 17 6 2.4741 -6.1488 2.5003 18 8 3.2956 -6.0731 3.6671 19 6 1.4799 -4.9858 2.4996 20 6 0.6003 -5.0674 1.2504 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8894 26 1 -0.8681 -4.2368 -2.2444 27 1 1.9292 -7.0940 0.0018 28 1 3.1010 -6.0928 -0.8881 29 1 4.0624 -6.8966 1.2514 30 1 3.8988 -5.1245 1.2507 31 1 1.9291 -7.0927 2.5007 32 1 3.9507 -6.7813 3.7334 33 1 2.0249 -4.0418 2.4992 34 1 0.8529 -5.0434 3.3894 35 1 -0.1082 -4.2392 1.2501 36 1 0.0554 -6.0114 1.2508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691824330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:34 Heat of formation + Delta-G solvation = -193.281219 kcal Electronic energy + Delta-G solvation = -18629.593225 eV Core-core repulsion = 15690.553340 eV Total energy + Delta-G solvation = -2939.039885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.97760 -39.77245 -37.17422 -37.12744 -35.15175 -32.83987 -31.87358 -30.26941 -26.78018 -24.96012 -24.08196 -22.89760 -21.96577 -19.54974 -19.04798 -18.30722 -18.12269 -17.73367 -16.69556 -16.45446 -15.93154 -15.42400 -14.96878 -14.77056 -14.40870 -14.12152 -13.94088 -13.49065 -13.19793 -13.12500 -12.86122 -12.82418 -12.52064 -12.40716 -12.27470 -12.08683 -11.68693 -11.67505 -11.30378 -11.14423 -10.98963 -10.81390 -10.60686 -10.38453 -8.12163 -6.20218 1.23519 1.39625 1.41080 1.52681 2.22681 2.44168 3.20834 3.34751 3.56744 3.69646 4.06619 4.09773 4.13279 4.28235 4.37559 4.46702 4.50184 4.67466 4.85893 4.90421 4.94857 5.02998 5.08223 5.11572 5.25336 5.28726 5.34983 5.53162 5.62147 5.66442 5.92867 6.07466 6.35193 6.98042 7.00651 7.09568 7.46251 8.98472 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.008025 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.394285 B = 3488.203630 C = 4264.117615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.017 3.983 10 C -0.092 4.092 11 C -0.050 4.050 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.498 6.498 15 C -0.089 4.089 16 C -0.146 4.146 17 C 0.111 3.889 18 O -0.584 6.584 19 C -0.113 4.113 20 C -0.097 4.097 21 H 0.260 0.740 22 H 0.030 0.970 23 H 0.002 0.998 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.413 0.587 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.394 0.606 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -13.817 2.951 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.069 0.931 9 C -0.020 4.020 10 C -0.129 4.129 11 C -0.051 4.051 12 C 0.339 3.661 13 O -0.442 6.442 14 O -0.310 6.310 15 C -0.127 4.127 16 C -0.183 4.183 17 C 0.053 3.947 18 O -0.392 6.392 19 C -0.150 4.150 20 C -0.135 4.135 21 H 0.069 0.931 22 H 0.048 0.952 23 H 0.020 0.980 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.273 0.727 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.383 -13.371 3.203 14.159 hybrid contribution 0.081 0.766 -0.928 1.206 sum 3.464 -12.604 2.276 13.268 Atomic orbital electron populations 1.70100 1.07314 1.27152 1.51923 1.25804 0.95696 1.02604 0.95264 0.85597 0.79162 0.79842 0.77632 1.19023 1.20604 1.20583 1.21752 0.93190 0.92934 1.49979 0.93069 1.19302 0.94163 0.91209 0.97278 1.21624 0.98105 0.91891 1.01312 1.20747 0.94683 0.99004 0.90656 1.23714 0.78156 0.77075 0.87152 1.90612 1.69661 1.36080 1.47874 1.84909 1.46224 1.51119 1.48702 1.21363 0.96417 0.96096 0.98781 1.22287 0.98550 1.03722 0.93772 1.21767 0.90837 0.98068 0.84038 1.86504 1.52676 1.56191 1.43862 1.21447 0.97397 0.98851 0.97354 1.21465 0.97325 1.03024 0.91656 0.93100 0.95234 0.97967 0.90615 0.93758 0.72671 0.90140 0.91448 0.88488 0.91802 0.90787 0.75601 0.92458 0.90673 0.91397 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 13.29 21.45 0.28 -55.20 16 2 C 0.00 0.24 5.46 84.65 0.46 0.71 16 3 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.05 2.82 7.74 -2.92 -0.02 2.80 16 9 C 0.02 0.87 4.10 29.85 0.12 0.99 16 10 C -0.09 -3.67 3.51 30.59 0.11 -3.57 16 11 C -0.05 -1.64 0.51 -52.93 -0.03 -1.66 16 12 C 0.49 17.53 6.86 71.24 0.49 18.02 16 13 O -0.55 -20.52 16.74 21.99 0.37 -20.15 16 14 O -0.50 -17.67 10.24 -51.40 -0.53 -18.20 16 15 C -0.09 -2.35 4.02 30.59 0.12 -2.23 16 16 C -0.15 -3.26 5.27 30.59 0.16 -3.10 16 17 C 0.11 2.54 3.47 30.60 0.11 2.65 16 18 O -0.58 -13.22 13.32 -148.98 -1.98 -15.21 16 19 C -0.11 -3.29 5.30 30.60 0.16 -3.13 16 20 C -0.10 -2.98 4.31 30.59 0.13 -2.84 16 21 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 22 H 0.03 1.58 5.32 -2.39 -0.01 1.57 16 23 H 0.00 0.11 6.43 -2.39 -0.02 0.09 16 24 H 0.08 2.96 4.81 -2.39 -0.01 2.95 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.41 10.66 9.10 -74.05 -0.67 9.98 16 27 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 28 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.39 4.91 9.08 -74.06 -0.67 4.24 16 33 H 0.06 2.00 6.43 -2.39 -0.02 1.99 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 2.46 6.40 -2.39 -0.02 2.44 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -69.85 283.32 2.00 -67.85 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.24 Total: 18.77 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 2.07 Total: -24.45 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -2.14 Total: -53.56 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.85 2.00 -67.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691824330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.435 kcal (2) G-P(sol) polarization free energy of solvation -69.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds