Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00405 * 2 1 4 4 C 1.53004 * 115.54757 * 325.67440 * 3 2 1 5 5 C 1.53078 * 117.52932 * 111.38398 * 3 2 1 6 6 C 1.52991 * 117.50047 * 179.97438 * 3 2 1 7 7 H 1.09006 * 117.49867 * 144.97741 * 6 3 2 8 8 N 1.46500 * 117.50253 * 359.97438 * 6 3 2 9 9 C 1.34773 * 120.00431 * 155.08766 * 8 6 3 10 10 O 1.21443 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.48832 * 120.00135 * 180.02562 * 9 8 6 12 12 O 1.21503 * 119.99913 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99765 * 179.97438 * 11 9 8 14 14 C 1.36126 * 119.99762 * 179.71995 * 13 11 9 15 15 H 1.08002 * 119.99676 * 0.28533 * 14 13 11 16 16 C 1.39582 * 119.99936 * 180.27850 * 14 13 11 17 17 N 1.31019 * 119.99748 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46812 * 90.00436 * 18 16 14 20 20 H 1.48502 * 109.47120 * 209.99641 * 18 16 14 21 21 H 1.48494 * 109.47357 * 330.00360 * 18 16 14 22 22 H 1.09000 * 109.46666 * 300.00230 * 1 2 3 23 23 H 1.08999 * 109.46899 * 59.99422 * 1 2 3 24 24 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46518 * 274.32542 * 4 3 2 26 26 H 1.09004 * 109.47071 * 34.32466 * 4 3 2 27 27 H 1.08994 * 109.46935 * 154.32581 * 4 3 2 28 28 H 1.08997 * 117.51728 * 359.97438 * 5 3 2 29 29 H 1.09005 * 117.48717 * 214.95767 * 5 3 2 30 30 H 0.97000 * 119.99456 * 335.08328 * 8 6 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 32 32 H 0.97004 * 119.99380 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.2373 2.3720 -0.7784 5 6 2.7503 1.7504 1.2640 6 6 3.5374 1.3988 0.0006 7 1 3.9917 2.2197 -0.5543 8 7 4.2919 0.1430 0.0017 9 6 5.5466 0.1101 -0.4893 10 8 6.0516 1.1215 -0.9332 11 6 6.3128 -1.1658 -0.4887 12 8 5.8074 -2.1777 -0.0450 13 7 7.5673 -1.1986 -0.9803 14 6 8.2702 -2.3644 -0.9744 15 1 7.8209 -3.2639 -0.5801 16 6 9.5716 -2.3972 -1.4782 17 7 10.2479 -3.5193 -1.4730 18 14 10.3488 -0.8412 -2.1597 19 1 11.0546 -0.1219 -1.0690 20 1 11.3189 -1.1985 -3.2257 21 1 9.2909 0.0336 -2.7259 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5280 2.3375 -1.8283 26 1 0.1676 2.1816 -0.6911 27 1 1.4657 3.3565 -0.3703 28 1 2.7935 1.0476 2.0960 29 1 2.6861 2.8029 1.5404 30 1 3.8884 -0.6649 0.3560 31 1 7.9710 -0.3907 -1.3341 32 1 11.1521 -3.5421 -1.8235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694343944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -104.668473 kcal Electronic energy + Delta-G solvation = -17181.424610 eV Core-core repulsion = 14142.686918 eV Total energy + Delta-G solvation = -3038.737691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.53201 -40.21654 -39.05654 -36.81966 -36.26323 -34.16653 -33.67982 -29.61055 -28.09302 -27.45211 -25.15185 -22.66732 -21.51101 -21.32684 -20.81442 -18.89560 -18.14233 -17.49097 -16.80224 -16.62796 -16.34731 -16.15053 -15.60531 -15.11612 -14.87271 -14.70044 -14.53750 -14.35183 -14.09358 -13.10434 -13.06270 -12.92535 -12.57301 -12.55717 -12.50640 -12.24441 -11.99785 -11.72841 -11.71594 -10.49451 -10.43424 -10.23568 -9.81746 -8.63898 -6.18254 0.44567 1.28579 1.32939 1.39227 1.60968 2.09884 2.17605 2.52014 2.81919 2.99385 3.05662 3.64221 3.70053 3.78042 3.98032 4.39829 4.50876 4.56656 4.71718 4.79420 4.83088 4.85583 4.91437 5.18587 5.24329 5.30329 5.71540 6.05071 6.23932 6.34181 6.55981 6.86354 7.11733 7.59656 8.50635 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.005066 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.918473 B = 5525.780990 C = 5912.003415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.038 3.962 4 C -0.141 4.141 5 C -0.186 4.186 6 C 0.068 3.932 7 H 0.145 0.855 8 N -0.663 5.663 9 C 0.527 3.473 10 O -0.558 6.558 11 C 0.405 3.595 12 O -0.605 6.605 13 N -0.528 5.528 14 C -0.341 4.341 15 H 0.077 0.923 16 C 0.012 3.988 17 N -0.890 5.890 18 Si 0.950 3.050 19 H -0.250 1.250 20 H -0.255 1.255 21 H -0.248 1.248 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.417 0.583 31 H 0.394 0.606 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.834 14.968 1.665 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.299 6.299 3 C -0.003 4.003 4 C -0.198 4.198 5 C -0.224 4.224 6 C -0.037 4.037 7 H 0.163 0.837 8 N -0.312 5.312 9 C 0.310 3.690 10 O -0.437 6.437 11 C 0.189 3.811 12 O -0.492 6.492 13 N -0.167 5.167 14 C -0.470 4.470 15 H 0.095 0.905 16 C -0.193 4.193 17 N -0.528 5.528 18 Si 0.769 3.231 19 H -0.174 1.174 20 H -0.179 1.179 21 H -0.172 1.172 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.254 0.746 31 H 0.230 0.770 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.513 14.710 1.588 22.171 hybrid contribution 0.470 -0.143 -0.133 0.509 sum -16.043 14.567 1.455 21.718 Atomic orbital electron populations 1.23035 0.78958 1.03802 1.01565 1.87892 1.22232 1.25269 1.94501 1.22703 0.91156 0.86231 1.00217 1.21875 1.00866 0.97029 1.00057 1.24340 1.01262 1.04495 0.92313 1.22434 0.88829 0.88456 1.03993 0.83716 1.44912 1.12893 1.13062 1.60380 1.19858 0.82857 0.88212 0.78090 1.90653 1.69795 1.35655 1.47621 1.19572 0.84059 0.89513 0.87912 1.90609 1.69760 1.36288 1.52578 1.41677 1.12525 1.11204 1.51263 1.19190 0.97403 0.88760 1.41674 0.90507 1.26102 0.95676 1.01602 0.95937 1.69552 1.12528 1.28277 1.42401 0.85572 0.79749 0.77785 0.80007 1.17433 1.17894 1.17211 0.92324 0.91964 0.88931 0.91382 0.89242 0.88684 0.88308 0.84311 0.74620 0.76987 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.05 113.37 1.14 1.47 16 2 O -0.38 -9.20 10.39 -148.98 -1.55 -10.74 16 3 C 0.04 0.79 3.03 -10.77 -0.03 0.76 16 4 C -0.14 -1.87 9.49 71.98 0.68 -1.19 16 5 C -0.19 -3.58 10.05 30.60 0.31 -3.27 16 6 C 0.07 1.81 6.15 44.97 0.28 2.08 16 7 H 0.15 3.77 7.40 -2.38 -0.02 3.76 16 8 N -0.66 -23.30 5.46 -444.54 -2.43 -25.73 16 9 C 0.53 22.48 7.87 87.08 0.69 23.16 16 10 O -0.56 -24.25 16.03 -3.54 -0.06 -24.31 16 11 C 0.40 20.69 7.82 87.08 0.68 21.37 16 12 O -0.60 -34.36 16.03 -3.73 -0.06 -34.42 16 13 N -0.53 -27.74 5.06 -308.87 -1.56 -29.30 16 14 C -0.34 -20.14 10.16 84.35 0.86 -19.28 16 15 H 0.08 5.21 7.37 -2.91 -0.02 5.18 16 16 C 0.01 0.66 5.51 85.14 0.47 1.13 16 17 N -0.89 -51.12 13.94 21.76 0.30 -50.81 16 18 Si 0.95 39.66 27.74 68.60 1.90 41.56 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 21 H -0.25 -9.84 6.53 99.48 0.65 -9.19 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.76 6.47 -2.39 -0.02 0.74 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.89 5.78 -2.38 -0.01 0.87 16 27 H 0.09 0.88 7.90 -2.39 -0.02 0.86 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.14 1.80 8.05 -2.38 -0.02 1.78 16 30 H 0.42 15.01 7.85 -92.71 -0.73 14.28 16 31 H 0.39 18.80 5.22 -92.71 -0.48 18.32 16 32 H 0.29 15.02 8.30 -92.71 -0.77 14.25 16 Total: -1.00 -71.69 282.41 1.52 -70.17 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.10 Total: 37.35 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 5.07 Total: 26.24 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.68 Total: -105.85 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -1.66 Total: -69.47 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.90 Total: 41.56 kcal Total: -71.69 1.52 -70.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694343944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.500 kcal (2) G-P(sol) polarization free energy of solvation -71.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds