Wall clock time and date at job start Mon Mar 30 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28780 * 125.44750 * 2 1 4 4 N 1.28998 * 108.72229 * 179.83191 * 3 2 1 5 5 C 1.33314 * 107.35586 * 0.42702 * 4 3 2 6 6 C 1.50703 * 126.55155 * 179.74014 * 5 4 3 7 7 O 1.42894 * 109.47113 * 314.99728 * 6 5 4 8 8 Si 1.63098 * 114.00252 * 210.00107 * 7 6 5 9 9 C 1.86296 * 109.47116 * 60.00046 * 8 7 6 10 10 C 1.86296 * 109.47158 * 180.02562 * 8 7 6 11 11 C 1.86305 * 109.46931 * 300.00161 * 8 7 6 12 12 C 1.50695 * 109.47105 * 75.00148 * 6 5 4 13 13 N 1.27942 * 120.00380 * 130.00062 * 12 6 5 14 14 Si 1.86807 * 119.99797 * 309.99784 * 12 6 5 15 15 H 1.48499 * 109.47163 * 0.02562 * 14 12 6 16 16 H 1.48499 * 109.47127 * 120.00383 * 14 12 6 17 17 H 1.48505 * 109.47196 * 240.00004 * 14 12 6 18 18 N 1.28884 * 125.44412 * 180.31164 * 2 1 3 19 19 H 1.09001 * 109.47060 * 269.69665 * 1 2 3 20 20 H 1.09004 * 109.47073 * 29.69154 * 1 2 3 21 21 H 1.09000 * 109.47212 * 149.69236 * 1 2 3 22 22 H 1.09002 * 109.46905 * 194.99574 * 6 5 4 23 23 H 1.08991 * 109.47281 * 60.00223 * 9 8 7 24 24 H 1.09005 * 109.47231 * 180.02562 * 9 8 7 25 25 H 1.09009 * 109.47053 * 299.99724 * 9 8 7 26 26 H 1.08996 * 109.47725 * 60.00204 * 10 8 7 27 27 H 1.09009 * 109.46955 * 180.02562 * 10 8 7 28 28 H 1.08998 * 109.47153 * 299.99291 * 10 8 7 29 29 H 1.08998 * 109.47108 * 59.99897 * 11 8 7 30 30 H 1.08998 * 109.47187 * 179.97438 * 11 8 7 31 31 H 1.09007 * 109.47210 * 299.99833 * 11 8 7 32 32 H 0.97003 * 120.00097 * 180.02562 * 13 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6779 0.0036 5 6 3.4620 -0.6552 -0.0036 6 6 4.6825 -1.5393 -0.0084 7 8 5.6271 -1.0421 -0.9584 8 14 6.5633 -2.1967 -1.6295 9 6 5.4868 -3.4301 -2.5186 10 6 7.7423 -1.4136 -2.8409 11 6 7.5309 -3.0650 -0.2951 12 6 5.3050 -1.5436 1.3640 13 7 5.5961 -2.6529 1.9310 14 14 5.6518 0.0710 2.2373 15 1 5.2253 1.2019 1.3747 16 1 4.8988 0.1134 3.5166 17 1 7.1064 0.1809 2.5154 18 7 2.2125 -1.0500 -0.0057 19 1 -0.3633 -0.0054 1.0277 20 1 -0.3633 0.8928 -0.5091 21 1 -0.3634 -0.8872 -0.5186 22 1 4.3943 -2.5549 -0.2797 23 1 4.9208 -2.9221 -3.2993 24 1 6.1125 -4.2020 -2.9668 25 1 4.7973 -3.8883 -1.8094 26 1 8.3722 -0.6923 -2.3205 27 1 8.3678 -2.1854 -3.2898 28 1 7.1766 -0.9054 -3.6218 29 1 6.8413 -3.5231 0.4140 30 1 8.1562 -3.8369 -0.7435 31 1 8.1608 -2.3434 0.2252 32 1 5.9964 -2.6557 2.8146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696711747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:15 Heat of formation + Delta-G solvation = 86.158114 kcal Electronic energy + Delta-G solvation = -16177.868678 eV Core-core repulsion = 13529.249308 eV Total energy + Delta-G solvation = -2648.619370 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.102 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.34104 -39.29202 -36.05592 -35.93358 -34.21075 -30.42566 -29.50501 -28.73295 -28.33482 -28.06928 -24.38684 -23.74798 -21.48689 -18.71412 -18.62718 -18.38678 -17.09333 -16.60211 -16.23318 -15.06544 -14.64997 -14.50507 -14.45542 -14.24195 -14.06207 -13.75243 -13.59338 -13.27406 -13.23253 -13.07492 -12.92278 -12.85400 -12.56603 -12.36703 -11.94644 -11.84341 -11.60943 -11.40401 -11.20956 -10.70647 -10.46989 -10.00311 0.16962 0.47692 0.85400 1.05118 1.11691 1.47682 1.55407 1.69718 1.86810 2.03642 2.13192 2.38809 2.90387 3.25077 3.35310 3.78594 3.81529 4.08872 4.14936 4.42803 4.63948 4.72485 4.74178 4.75992 4.78423 4.79120 4.83233 4.95549 5.07939 5.15527 5.51427 5.59310 5.73152 6.57651 7.38036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.139 5.139 3 N -0.062 5.062 4 N -0.249 5.249 5 C 0.161 3.839 6 C 0.258 3.742 7 O -0.604 6.604 8 Si 1.256 2.744 9 C -0.509 4.509 10 C -0.465 4.465 11 C -0.518 4.518 12 C -0.028 4.028 13 N -0.598 5.598 14 Si 0.900 3.100 15 H -0.185 1.185 16 H -0.247 1.247 17 H -0.235 1.235 18 N -0.290 5.290 19 H 0.104 0.896 20 H 0.116 0.884 21 H 0.113 0.887 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -0.978 0.248 3.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.051 5.051 3 N -0.056 5.056 4 N -0.120 5.120 5 C -0.122 4.122 6 C 0.196 3.804 7 O -0.559 6.559 8 Si 1.394 2.606 9 C -0.611 4.611 10 C -0.572 4.572 11 C -0.620 4.620 12 C -0.278 4.278 13 N -0.214 5.214 14 Si 0.713 3.287 15 H -0.105 1.105 16 H -0.170 1.170 17 H -0.158 1.158 18 N -0.142 5.142 19 H 0.123 0.877 20 H 0.134 0.866 21 H 0.131 0.869 22 H 0.127 0.873 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.453 -0.359 0.384 3.493 hybrid contribution 0.500 -0.720 0.320 0.933 sum -2.953 -1.079 0.705 3.222 Atomic orbital electron populations 1.22532 0.68631 1.07210 1.06349 1.50136 1.10930 1.00731 1.43297 1.79095 0.96508 1.14199 1.15759 1.76073 1.09316 1.10464 1.16191 1.24948 0.92337 0.90944 1.04000 1.18141 0.82013 0.93938 0.86308 1.85410 1.53897 1.59941 1.56671 0.77307 0.62028 0.56844 0.64378 1.26951 1.11167 1.13657 1.09354 1.26284 1.11286 1.07866 1.11729 1.27171 1.10602 1.09080 1.15167 1.30590 0.94843 1.03769 0.98633 1.67982 1.07150 1.31270 1.15034 0.85988 0.82679 0.79399 0.80597 1.10491 1.17013 1.15807 1.74655 1.02739 1.15547 1.21308 0.87747 0.86603 0.86882 0.87335 0.90999 0.90495 0.91125 0.90587 0.90364 0.90715 0.89070 0.90949 0.91421 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.42 11.63 59.85 0.70 0.27 16 2 N -0.14 -0.15 4.40 -16.69 -0.07 -0.23 16 3 N -0.06 -0.22 13.25 60.35 0.80 0.58 16 4 N -0.25 -1.18 10.10 32.45 0.33 -0.85 16 5 C 0.16 0.54 6.49 -156.62 -1.02 -0.48 16 6 C 0.26 0.46 2.40 -29.04 -0.07 0.39 16 7 O -0.60 -0.94 8.04 -35.23 -0.28 -1.23 16 8 Si 1.26 -0.78 12.68 -169.99 -2.16 -2.94 16 9 C -0.51 0.14 8.56 101.05 0.87 1.01 16 10 C -0.47 0.16 8.65 101.05 0.87 1.04 16 11 C -0.52 0.01 7.98 101.05 0.81 0.82 16 12 C -0.03 -0.04 4.12 -13.90 -0.06 -0.09 16 13 N -0.60 -0.35 11.40 56.23 0.64 0.29 16 14 Si 0.90 1.48 27.65 -169.99 -4.70 -3.22 16 15 H -0.18 -0.56 5.84 56.52 0.33 -0.23 16 16 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 17 H -0.24 -0.32 7.11 56.52 0.40 0.08 16 18 N -0.29 -0.74 12.13 32.47 0.39 -0.35 16 19 H 0.10 -0.65 8.14 -51.93 -0.42 -1.07 16 20 H 0.12 -0.73 8.14 -51.93 -0.42 -1.15 16 21 H 0.11 -0.69 8.14 -51.93 -0.42 -1.11 16 22 H 0.11 0.03 6.12 -51.93 -0.32 -0.29 16 23 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 24 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 25 H 0.07 -0.02 7.10 -51.92 -0.37 -0.39 16 26 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 27 H 0.08 -0.09 7.96 -51.92 -0.41 -0.50 16 28 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 29 H 0.09 0.05 5.48 -51.93 -0.28 -0.23 16 30 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.35 -0.41 8.23 -40.82 -0.34 -0.75 16 LS Contribution 276.65 15.07 4.17 4.17 Total: 0.00 -6.04 276.65 -3.12 -9.16 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: -4.34 Total: -8.35 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 2.10 Total: 2.96 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: 2.09 Total: -0.55 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -0.28 Total: -1.23 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: -6.86 Total: -6.15 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -6.04 -3.12 -9.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696711747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.315 kcal (2) G-P(sol) polarization free energy of solvation -6.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds