Wall clock time and date at job start Mon Mar 30 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28780 * 125.44750 * 2 1 4 4 N 1.28998 * 108.72229 * 179.83191 * 3 2 1 5 5 C 1.33314 * 107.35586 * 0.42702 * 4 3 2 6 6 C 1.50703 * 126.55155 * 179.74014 * 5 4 3 7 7 O 1.42894 * 109.47113 * 314.99728 * 6 5 4 8 8 Si 1.63098 * 114.00252 * 210.00107 * 7 6 5 9 9 C 1.86296 * 109.47116 * 60.00046 * 8 7 6 10 10 C 1.86296 * 109.47158 * 180.02562 * 8 7 6 11 11 C 1.86305 * 109.46931 * 300.00161 * 8 7 6 12 12 C 1.50695 * 109.47105 * 75.00148 * 6 5 4 13 13 N 1.27942 * 120.00380 * 130.00062 * 12 6 5 14 14 Si 1.86807 * 119.99797 * 309.99784 * 12 6 5 15 15 H 1.48499 * 109.47163 * 0.02562 * 14 12 6 16 16 H 1.48499 * 109.47127 * 120.00383 * 14 12 6 17 17 H 1.48505 * 109.47196 * 240.00004 * 14 12 6 18 18 N 1.28884 * 125.44412 * 180.31164 * 2 1 3 19 19 H 1.09001 * 109.47060 * 269.69665 * 1 2 3 20 20 H 1.09004 * 109.47073 * 29.69154 * 1 2 3 21 21 H 1.09000 * 109.47212 * 149.69236 * 1 2 3 22 22 H 1.09002 * 109.46905 * 194.99574 * 6 5 4 23 23 H 1.08991 * 109.47281 * 60.00223 * 9 8 7 24 24 H 1.09005 * 109.47231 * 180.02562 * 9 8 7 25 25 H 1.09009 * 109.47053 * 299.99724 * 9 8 7 26 26 H 1.08996 * 109.47725 * 60.00204 * 10 8 7 27 27 H 1.09009 * 109.46955 * 180.02562 * 10 8 7 28 28 H 1.08998 * 109.47153 * 299.99291 * 10 8 7 29 29 H 1.08998 * 109.47108 * 59.99897 * 11 8 7 30 30 H 1.08998 * 109.47187 * 179.97438 * 11 8 7 31 31 H 1.09007 * 109.47210 * 299.99833 * 11 8 7 32 32 H 0.97003 * 120.00097 * 180.02562 * 13 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6779 0.0036 5 6 3.4620 -0.6552 -0.0036 6 6 4.6825 -1.5393 -0.0084 7 8 5.6271 -1.0421 -0.9584 8 14 6.5633 -2.1967 -1.6295 9 6 5.4868 -3.4301 -2.5186 10 6 7.7423 -1.4136 -2.8409 11 6 7.5309 -3.0650 -0.2951 12 6 5.3050 -1.5436 1.3640 13 7 5.5961 -2.6529 1.9310 14 14 5.6518 0.0710 2.2373 15 1 5.2253 1.2019 1.3747 16 1 4.8988 0.1134 3.5166 17 1 7.1064 0.1809 2.5154 18 7 2.2125 -1.0500 -0.0057 19 1 -0.3633 -0.0054 1.0277 20 1 -0.3633 0.8928 -0.5091 21 1 -0.3634 -0.8872 -0.5186 22 1 4.3943 -2.5549 -0.2797 23 1 4.9208 -2.9221 -3.2993 24 1 6.1125 -4.2020 -2.9668 25 1 4.7973 -3.8883 -1.8094 26 1 8.3722 -0.6923 -2.3205 27 1 8.3678 -2.1854 -3.2898 28 1 7.1766 -0.9054 -3.6218 29 1 6.8413 -3.5231 0.4140 30 1 8.1562 -3.8369 -0.7435 31 1 8.1608 -2.3434 0.2252 32 1 5.9964 -2.6557 2.8146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696711747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:15 Heat of formation + Delta-G solvation = 90.099752 kcal Electronic energy + Delta-G solvation = -16177.697756 eV Core-core repulsion = 13529.249308 eV Total energy + Delta-G solvation = -2648.448448 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 243.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.46878 -39.35411 -36.10589 -35.98267 -34.34164 -30.35224 -29.47154 -28.71011 -28.30901 -28.07306 -24.47684 -23.83096 -21.56564 -18.75922 -18.67249 -18.45151 -17.12580 -16.65903 -16.30921 -15.21977 -14.67277 -14.38119 -14.24493 -14.20857 -14.03177 -13.73417 -13.54053 -13.26260 -13.18914 -13.06910 -12.94902 -12.92026 -12.62507 -12.49760 -12.08524 -11.88830 -11.69357 -11.56493 -11.26926 -10.68686 -10.46617 -10.07720 0.06089 0.37814 0.88280 0.94382 1.03184 1.38547 1.45457 1.60249 1.91237 1.99584 2.09020 2.39422 2.84837 3.19311 3.34578 3.84655 4.19991 4.25745 4.31948 4.56732 4.59024 4.74327 4.76973 4.77880 4.79937 4.81407 4.85733 4.96005 5.08096 5.16252 5.55169 5.63186 5.74528 6.56469 7.22991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.126 5.126 3 N -0.081 5.081 4 N -0.279 5.279 5 C 0.152 3.848 6 C 0.253 3.747 7 O -0.618 6.618 8 Si 1.282 2.718 9 C -0.514 4.514 10 C -0.473 4.473 11 C -0.522 4.522 12 C -0.027 4.027 13 N -0.594 5.594 14 Si 0.914 3.086 15 H -0.208 1.208 16 H -0.254 1.254 17 H -0.231 1.231 18 N -0.297 5.297 19 H 0.124 0.876 20 H 0.133 0.867 21 H 0.131 0.869 22 H 0.123 0.877 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 -1.734 0.237 3.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.040 5.040 3 N -0.074 5.074 4 N -0.150 5.150 5 C -0.132 4.132 6 C 0.191 3.809 7 O -0.573 6.573 8 Si 1.420 2.580 9 C -0.616 4.616 10 C -0.579 4.579 11 C -0.624 4.624 12 C -0.278 4.278 13 N -0.212 5.212 14 Si 0.729 3.271 15 H -0.129 1.129 16 H -0.178 1.178 17 H -0.154 1.154 18 N -0.150 5.150 19 H 0.142 0.858 20 H 0.152 0.848 21 H 0.149 0.851 22 H 0.140 0.860 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.872 -1.107 0.382 4.045 hybrid contribution 0.542 -0.486 0.327 0.798 sum -3.330 -1.593 0.708 3.759 Atomic orbital electron populations 1.23105 0.65767 1.09037 1.08219 1.50644 1.12350 0.99890 1.41120 1.79013 0.96612 1.15037 1.16771 1.76034 1.10117 1.11375 1.17435 1.25251 0.93079 0.90774 1.04049 1.18283 0.81771 0.94238 0.86571 1.85407 1.54102 1.60970 1.56795 0.76870 0.61315 0.56149 0.63715 1.26996 1.11312 1.13931 1.09350 1.26369 1.11571 1.08151 1.11848 1.27217 1.10679 1.09253 1.15244 1.30416 0.95337 1.03427 0.98611 1.67947 1.06744 1.30884 1.15595 0.85771 0.82526 0.79069 0.79700 1.12889 1.17826 1.15399 1.74628 1.02675 1.16059 1.21666 0.85761 0.84824 0.85085 0.86014 0.91367 0.89867 0.91061 0.90794 0.89451 0.91055 0.89508 0.90366 0.91627 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.77 11.63 127.77 1.49 0.72 16 2 N -0.13 -0.28 4.40 -206.71 -0.91 -1.19 16 3 N -0.08 -0.64 13.25 37.02 0.49 -0.15 16 4 N -0.28 -3.01 10.10 -51.26 -0.52 -3.53 16 5 C 0.15 1.14 6.49 138.55 0.90 2.04 16 6 C 0.25 1.02 2.40 29.10 0.07 1.09 16 7 O -0.62 -2.35 8.04 -148.98 -1.20 -3.55 16 8 Si 1.28 -1.44 12.68 68.60 0.87 -0.57 16 9 C -0.51 0.39 8.56 113.37 0.97 1.36 16 10 C -0.47 0.25 8.65 113.37 0.98 1.23 16 11 C -0.52 0.15 7.98 113.37 0.90 1.05 16 12 C -0.03 -0.08 4.12 88.67 0.37 0.29 16 13 N -0.59 -0.60 11.40 24.11 0.27 -0.32 16 14 Si 0.91 3.90 27.65 68.60 1.90 5.80 16 15 H -0.21 -1.70 5.84 99.48 0.58 -1.12 16 16 H -0.25 -1.30 7.11 99.48 0.71 -0.59 16 17 H -0.23 -0.74 7.11 99.48 0.71 -0.03 16 18 N -0.30 -1.59 12.13 -51.20 -0.62 -2.21 16 19 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 20 H 0.13 -1.81 8.14 -2.38 -0.02 -1.83 16 21 H 0.13 -1.77 8.14 -2.39 -0.02 -1.79 16 22 H 0.12 0.07 6.12 -2.39 -0.01 0.06 16 23 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 24 H 0.08 -0.17 7.96 -2.38 -0.02 -0.19 16 25 H 0.07 -0.06 7.10 -2.38 -0.02 -0.08 16 26 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 27 H 0.09 -0.22 7.96 -2.38 -0.02 -0.24 16 28 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 29 H 0.09 0.07 5.48 -2.39 -0.01 0.05 16 30 H 0.08 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H 0.06 0.01 7.96 -2.38 -0.02 0.00 16 32 H 0.36 -0.95 8.23 -92.71 -0.76 -1.71 16 Total: 0.00 -14.27 276.65 6.96 -7.31 By element: Atomic # 1 Polarization: -10.37 SS G_CDS: 1.00 Total: -9.38 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.68 Total: 7.78 kcal Atomic # 7 Polarization: -6.11 SS G_CDS: -1.28 Total: -7.40 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: -1.20 Total: -3.55 kcal Atomic # 14 Polarization: 2.46 SS G_CDS: 2.77 Total: 5.23 kcal Total: -14.27 6.96 -7.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696711747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.413 kcal (2) G-P(sol) polarization free energy of solvation -14.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds