Wall clock time and date at job start Mon Mar 30 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47244 * 269.99308 * 3 2 1 5 5 H 1.48495 * 109.47549 * 30.00098 * 3 2 1 6 6 H 1.48503 * 109.46999 * 149.99969 * 3 2 1 7 7 C 1.37875 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47187 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47077 * 55.00090 * 11 10 9 13 13 C 1.50702 * 109.47056 * 294.99916 * 11 10 9 14 14 O 1.20821 * 120.00185 * 240.00211 * 13 11 10 15 15 O 1.34228 * 119.99885 * 60.00012 * 13 11 10 16 16 C 1.53002 * 109.47541 * 175.00036 * 11 10 9 17 17 C 1.53177 * 109.53875 * 300.00013 * 16 11 10 18 18 C 1.53096 * 109.16164 * 183.14936 * 17 16 11 19 19 O 1.42908 * 109.41214 * 57.60571 * 18 17 16 20 20 C 1.42897 * 114.09789 * 298.84248 * 19 18 17 21 21 C 1.53090 * 109.41529 * 61.15937 * 20 19 18 22 22 H 0.97005 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47083 * 59.99710 * 9 7 2 24 24 H 1.08997 * 109.47001 * 299.99302 * 9 7 2 25 25 H 1.08999 * 109.47226 * 60.00021 * 10 9 7 26 26 H 1.09006 * 109.47236 * 300.00035 * 10 9 7 27 27 H 0.96707 * 117.00217 * 180.02562 * 15 13 11 28 28 H 1.09002 * 109.61364 * 60.21656 * 16 11 10 29 29 H 1.09003 * 109.52410 * 63.24757 * 17 16 11 30 30 H 1.08994 * 109.57348 * 303.08372 * 17 16 11 31 31 H 1.08993 * 109.48033 * 177.59323 * 18 17 16 32 32 H 1.09001 * 109.48095 * 297.62604 * 18 17 16 33 33 H 1.09002 * 109.48246 * 301.17405 * 20 19 18 34 34 H 1.09006 * 109.47919 * 181.14281 * 20 19 18 35 35 H 1.09002 * 109.52149 * 182.47952 * 21 20 19 36 36 H 1.09007 * 109.52293 * 62.29456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 1 0.7884 -5.0068 -0.8422 13 6 0.7086 -5.1223 1.2873 14 8 0.9276 -6.0512 2.0283 15 8 -0.2220 -4.2107 1.6109 16 6 2.4697 -6.1473 -0.1258 17 6 3.2549 -6.0115 -1.4340 18 6 4.1855 -7.2173 -1.5890 19 8 3.4136 -8.4196 -1.5610 20 6 2.6951 -8.6235 -0.3428 21 6 1.7047 -7.4742 -0.1377 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 -0.6907 -4.3394 2.4469 28 1 3.1604 -6.1322 0.7173 29 1 3.8459 -5.0959 -1.4107 30 1 2.5614 -5.9762 -2.2741 31 1 4.7156 -7.1475 -2.5388 32 1 4.9054 -7.2284 -0.7707 33 1 3.3955 -8.6530 0.4918 34 1 2.1515 -9.5669 -0.3949 35 1 1.1869 -7.6048 0.8125 36 1 0.9791 -7.4691 -0.9512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696827511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:16 Heat of formation + Delta-G solvation = -165.396003 kcal Electronic energy + Delta-G solvation = -18144.154295 eV Core-core repulsion = 15206.323604 eV Total energy + Delta-G solvation = -2937.830691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40652 -38.93797 -35.92462 -35.46464 -33.23792 -31.44473 -30.96833 -28.05982 -24.67499 -24.05449 -23.15382 -21.33430 -20.09321 -19.55210 -17.67078 -16.49180 -16.31904 -15.95614 -15.86069 -15.30936 -14.57117 -14.46803 -13.99431 -13.56934 -13.12851 -12.84378 -12.45483 -12.19558 -12.01354 -11.73261 -11.33721 -11.12845 -11.00717 -10.93360 -10.82372 -10.53602 -10.46224 -10.19969 -9.91751 -9.63221 -9.49580 -9.24569 -8.97442 -8.31004 -5.98290 -4.00402 2.63490 3.31344 3.38045 3.40920 3.51478 3.92096 4.45475 4.73753 4.90246 4.92616 5.09151 5.27962 5.37319 5.42801 5.45793 5.58074 5.67451 5.72425 5.79248 5.91853 5.99531 6.01787 6.16869 6.28270 6.39587 6.53831 6.63812 6.98196 7.03238 7.23137 7.71576 7.89477 8.06404 8.38365 8.43400 9.07652 9.62678 11.12496 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.005935 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.002960 B = 4716.667620 C = 5410.239121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.011 3.989 10 C -0.105 4.105 11 C -0.078 4.078 12 H 0.103 0.897 13 C 0.491 3.509 14 O -0.535 6.535 15 O -0.488 6.488 16 C -0.071 4.071 17 C -0.153 4.153 18 C 0.062 3.938 19 O -0.389 6.389 20 C 0.064 3.936 21 C -0.164 4.164 22 H 0.259 0.741 23 H 0.015 0.985 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.396 0.604 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -13.445 -0.512 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.026 4.026 10 C -0.143 4.143 11 C -0.097 4.097 12 H 0.121 0.879 13 C 0.335 3.665 14 O -0.427 6.427 15 O -0.297 6.297 16 C -0.089 4.089 17 C -0.190 4.190 18 C -0.014 4.014 19 O -0.308 6.308 20 C -0.012 4.012 21 C -0.201 4.201 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.254 0.746 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.800 -13.634 -0.843 14.179 hybrid contribution 0.064 1.191 0.799 1.436 sum 3.864 -12.443 -0.044 13.029 Atomic orbital electron populations 1.69976 1.05949 1.26417 1.50777 1.24991 0.94816 0.99074 0.95447 0.86651 0.79870 0.83738 0.78063 1.20714 1.21269 1.19977 1.21238 0.92882 0.91201 1.50672 0.92913 1.19373 0.93870 0.90544 0.98802 1.21767 0.99188 0.91851 1.01484 1.21307 0.96884 0.98580 0.92931 0.87856 1.23593 0.77033 0.77859 0.87979 1.90570 1.66229 1.33196 1.52675 1.84918 1.49668 1.50989 1.44151 1.21037 0.96584 0.93161 0.98161 1.22318 0.99659 0.99176 0.97879 1.22577 0.92790 0.84147 1.01917 1.87887 1.63684 1.41388 1.37804 1.22548 0.93799 0.98273 0.86629 1.22508 0.98927 0.94639 1.04033 0.93103 0.96642 0.93680 0.92960 0.91341 0.74636 0.90492 0.89795 0.90737 0.88969 0.93339 0.93348 0.89267 0.88632 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.01 0.27 4.61 -27.88 -0.13 0.14 16 10 C -0.11 -2.04 4.40 -26.73 -0.12 -2.16 16 11 C -0.08 -1.28 1.92 -91.77 -0.18 -1.46 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 13 C 0.49 8.48 7.32 36.01 0.26 8.74 16 14 O -0.54 -9.58 14.46 -18.75 -0.27 -9.85 16 15 O -0.49 -8.39 10.57 -39.25 -0.41 -8.80 16 16 C -0.07 -1.00 1.49 -90.44 -0.13 -1.14 16 17 C -0.15 -1.93 4.98 -26.59 -0.13 -2.07 16 18 C 0.06 0.72 6.84 37.21 0.25 0.97 16 19 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 20 C 0.06 0.77 6.84 37.20 0.25 1.02 16 21 C -0.16 -2.17 5.06 -26.60 -0.13 -2.31 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 1.18 5.46 -51.93 -0.28 0.89 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.25 6.25 -51.93 -0.32 0.93 16 27 H 0.40 4.88 9.10 45.56 0.41 5.30 16 28 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.08 1.05 6.51 -51.93 -0.34 0.71 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.38 5.65 -51.93 -0.29 1.09 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -31.75 288.38 -6.06 -37.81 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.59 Total: 2.78 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.46 Total: -11.47 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.07 Total: -24.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.75 -6.06 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696827511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.590 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds