Wall clock time and date at job start Mon Mar 30 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47244 * 269.99308 * 3 2 1 5 5 H 1.48495 * 109.47549 * 30.00098 * 3 2 1 6 6 H 1.48503 * 109.46999 * 149.99969 * 3 2 1 7 7 C 1.37875 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47187 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47077 * 55.00090 * 11 10 9 13 13 C 1.50702 * 109.47056 * 294.99916 * 11 10 9 14 14 O 1.20821 * 120.00185 * 240.00211 * 13 11 10 15 15 O 1.34228 * 119.99885 * 60.00012 * 13 11 10 16 16 C 1.53002 * 109.47541 * 175.00036 * 11 10 9 17 17 C 1.53177 * 109.53875 * 300.00013 * 16 11 10 18 18 C 1.53096 * 109.16164 * 183.14936 * 17 16 11 19 19 O 1.42908 * 109.41214 * 57.60571 * 18 17 16 20 20 C 1.42897 * 114.09789 * 298.84248 * 19 18 17 21 21 C 1.53090 * 109.41529 * 61.15937 * 20 19 18 22 22 H 0.97005 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47083 * 59.99710 * 9 7 2 24 24 H 1.08997 * 109.47001 * 299.99302 * 9 7 2 25 25 H 1.08999 * 109.47226 * 60.00021 * 10 9 7 26 26 H 1.09006 * 109.47236 * 300.00035 * 10 9 7 27 27 H 0.96707 * 117.00217 * 180.02562 * 15 13 11 28 28 H 1.09002 * 109.61364 * 60.21656 * 16 11 10 29 29 H 1.09003 * 109.52410 * 63.24757 * 17 16 11 30 30 H 1.08994 * 109.57348 * 303.08372 * 17 16 11 31 31 H 1.08993 * 109.48033 * 177.59323 * 18 17 16 32 32 H 1.09001 * 109.48095 * 297.62604 * 18 17 16 33 33 H 1.09002 * 109.48246 * 301.17405 * 20 19 18 34 34 H 1.09006 * 109.47919 * 181.14281 * 20 19 18 35 35 H 1.09002 * 109.52149 * 182.47952 * 21 20 19 36 36 H 1.09007 * 109.52293 * 62.29456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 1 0.7884 -5.0068 -0.8422 13 6 0.7086 -5.1223 1.2873 14 8 0.9276 -6.0512 2.0283 15 8 -0.2220 -4.2107 1.6109 16 6 2.4697 -6.1473 -0.1258 17 6 3.2549 -6.0115 -1.4340 18 6 4.1855 -7.2173 -1.5890 19 8 3.4136 -8.4196 -1.5610 20 6 2.6951 -8.6235 -0.3428 21 6 1.7047 -7.4742 -0.1377 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 -0.6907 -4.3394 2.4469 28 1 3.1604 -6.1322 0.7173 29 1 3.8459 -5.0959 -1.4107 30 1 2.5614 -5.9762 -2.2741 31 1 4.7156 -7.1475 -2.5388 32 1 4.9054 -7.2284 -0.7707 33 1 3.3955 -8.6530 0.4918 34 1 2.1515 -9.5669 -0.3949 35 1 1.1869 -7.6048 0.8125 36 1 0.9791 -7.4691 -0.9512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696827511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:16 Heat of formation + Delta-G solvation = -186.106033 kcal Electronic energy + Delta-G solvation = -18145.052349 eV Core-core repulsion = 15206.323604 eV Total energy + Delta-G solvation = -2938.728745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71486 -40.02433 -37.23391 -36.92662 -35.07063 -33.04498 -31.95750 -29.70505 -26.37363 -25.19203 -24.36866 -22.90715 -21.40758 -20.83406 -19.10033 -18.31797 -17.81420 -17.03476 -16.88432 -16.64581 -16.41868 -15.59463 -15.22375 -14.73690 -14.62524 -14.44791 -13.96081 -13.60754 -13.37148 -13.15199 -12.81310 -12.75134 -12.48974 -12.40051 -12.17605 -11.99056 -11.82387 -11.59389 -11.32743 -11.19543 -11.02056 -10.87788 -10.45638 -10.36992 -8.13281 -6.22689 1.24452 1.42389 1.42697 1.53318 2.25246 2.44344 3.01703 3.20151 3.55558 3.77788 3.89291 4.11469 4.22916 4.29604 4.36694 4.42516 4.48006 4.64364 4.79353 4.81656 4.86260 4.88569 4.97943 5.05877 5.13893 5.20664 5.35559 5.40866 5.59243 5.71495 5.86080 6.03866 6.30351 6.31851 6.95967 7.10636 7.44897 8.97712 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.005935 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.002960 B = 4716.667620 C = 5410.239121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.013 3.987 10 C -0.091 4.091 11 C -0.073 4.073 12 H 0.105 0.895 13 C 0.490 3.510 14 O -0.542 6.542 15 O -0.504 6.504 16 C -0.066 4.066 17 C -0.150 4.150 18 C 0.061 3.939 19 O -0.401 6.401 20 C 0.065 3.935 21 C -0.159 4.159 22 H 0.261 0.739 23 H -0.010 1.010 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.415 0.585 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -13.843 -0.780 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.024 4.024 10 C -0.129 4.129 11 C -0.092 4.092 12 H 0.123 0.877 13 C 0.335 3.665 14 O -0.433 6.433 15 O -0.316 6.316 16 C -0.085 4.085 17 C -0.188 4.188 18 C -0.015 4.015 19 O -0.320 6.320 20 C -0.012 4.012 21 C -0.196 4.196 22 H 0.070 0.930 23 H 0.008 0.992 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.275 0.725 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.154 -14.043 -1.100 15.000 hybrid contribution -0.408 1.307 0.913 1.646 sum 4.746 -12.737 -0.187 13.593 Atomic orbital electron populations 1.70106 1.07570 1.27378 1.51866 1.25870 0.95677 1.02909 0.95112 0.85573 0.78719 0.79122 0.78377 1.19898 1.21052 1.18975 1.21721 0.93404 0.92640 1.50167 0.92464 1.19266 0.94386 0.91935 0.96780 1.21520 0.98085 0.91327 1.01928 1.21273 0.97117 0.98069 0.92761 0.87658 1.23711 0.76999 0.77679 0.88132 1.90567 1.66460 1.33386 1.52923 1.84867 1.49932 1.51203 1.45596 1.21007 0.96017 0.92546 0.98906 1.22308 0.99707 1.00021 0.96759 1.22697 0.92473 0.82968 1.03369 1.87879 1.63909 1.41963 1.38294 1.22612 0.93653 0.98311 0.86588 1.22434 0.99139 0.94713 1.03337 0.93037 0.99187 0.95271 0.93228 0.90094 0.72494 0.90976 0.89617 0.90932 0.87134 0.92433 0.92759 0.87614 0.89830 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.01 0.66 4.61 29.85 0.14 0.80 16 10 C -0.09 -3.49 4.40 30.59 0.13 -3.35 16 11 C -0.07 -2.37 1.92 -11.54 -0.02 -2.39 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 C 0.49 16.79 7.32 71.24 0.52 17.31 16 14 O -0.54 -19.02 14.46 21.98 0.32 -18.70 16 15 O -0.50 -17.46 10.57 -51.40 -0.54 -18.00 16 16 C -0.07 -1.79 1.49 -10.68 -0.02 -1.80 16 17 C -0.15 -3.53 4.98 30.69 0.15 -3.38 16 18 C 0.06 1.26 6.84 72.01 0.49 1.76 16 19 O -0.40 -9.65 10.77 -148.98 -1.60 -11.26 16 20 C 0.06 1.42 6.84 72.01 0.49 1.91 16 21 C -0.16 -4.00 5.06 30.68 0.16 -3.84 16 22 H 0.26 14.77 8.31 -92.70 -0.77 13.99 16 23 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 24 H 0.03 1.56 5.46 -2.39 -0.01 1.54 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.87 6.25 -2.38 -0.01 2.86 16 27 H 0.41 10.23 9.10 -74.05 -0.67 9.56 16 28 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 29 H 0.09 1.98 6.51 -2.39 -0.02 1.96 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.08 2.33 5.65 -2.39 -0.01 2.31 16 36 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -66.59 288.38 3.63 -62.97 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.40 Total: 16.82 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 2.74 Total: -22.17 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.38 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.83 Total: -47.96 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.59 3.63 -62.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696827511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.141 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds