Wall clock time and date at job start Mon Mar 30 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47081 * 240.00157 * 3 2 1 5 5 H 1.48499 * 109.47390 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47367 * 120.00181 * 3 2 1 7 7 C 1.37881 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47437 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47608 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46495 * 304.99850 * 11 10 9 13 13 C 1.50697 * 109.46796 * 64.99682 * 11 10 9 14 14 O 1.20833 * 119.99747 * 120.00770 * 13 11 10 15 15 O 1.34230 * 120.00262 * 299.72392 * 13 11 10 16 16 C 1.52996 * 109.47255 * 185.00015 * 11 10 9 17 17 C 1.53185 * 109.54132 * 179.82024 * 16 11 10 18 18 C 1.53106 * 109.15323 * 183.24176 * 17 16 11 19 19 O 1.42900 * 109.49120 * 57.47924 * 18 17 16 20 20 C 1.42908 * 114.09269 * 298.88644 * 19 18 17 21 21 C 1.53090 * 109.41702 * 61.15800 * 20 19 18 22 22 H 0.96989 * 120.00253 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46881 * 59.99910 * 9 7 2 24 24 H 1.09004 * 109.47405 * 300.00055 * 9 7 2 25 25 H 1.09000 * 109.47241 * 60.00030 * 10 9 7 26 26 H 1.09008 * 109.47494 * 300.00322 * 10 9 7 27 27 H 0.96699 * 116.99771 * 180.27188 * 15 13 11 28 28 H 1.08995 * 109.54572 * 299.99895 * 16 11 10 29 29 H 1.09000 * 109.52101 * 303.05828 * 17 16 11 30 30 H 1.09001 * 109.51901 * 63.24518 * 17 16 11 31 31 H 1.08997 * 109.40543 * 297.49177 * 18 17 16 32 32 H 1.09006 * 109.48660 * 177.51035 * 18 17 16 33 33 H 1.08998 * 109.47994 * 301.17336 * 20 19 18 34 34 H 1.08999 * 109.47698 * 181.13754 * 20 19 18 35 35 H 1.09001 * 109.52335 * 182.48133 * 21 20 19 36 36 H 1.09002 * 109.57613 * 62.32794 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7881 -5.0073 0.8404 13 6 0.7097 -5.1215 -1.2891 14 8 0.9292 -6.0501 -2.0305 15 8 -0.2247 -4.2128 -1.6101 16 6 2.4699 -6.1473 0.1245 17 6 1.7054 -7.4747 0.1286 18 6 2.6954 -8.6240 0.3359 19 8 3.4103 -8.4231 1.5568 20 6 4.1816 -7.2205 1.5901 21 6 3.2512 -6.0147 1.4354 22 1 -0.4850 0.8399 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5572 0.8897 25 1 2.8720 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 -0.6956 -4.3434 -2.4445 28 1 3.1630 -6.1282 -0.7165 29 1 0.9765 -7.4727 0.9390 30 1 1.1916 -7.6019 -0.8243 31 1 3.3983 -8.6512 -0.4967 32 1 2.1521 -9.5678 0.3839 33 1 4.9040 -7.2294 0.7739 34 1 4.7088 -7.1531 2.5417 35 1 3.8420 -5.0988 1.4163 36 1 2.5544 -5.9812 2.2730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696827517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:19 Heat of formation + Delta-G solvation = -165.313214 kcal Electronic energy + Delta-G solvation = -18143.783472 eV Core-core repulsion = 15205.956371 eV Total energy + Delta-G solvation = -2937.827101 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40645 -38.93493 -35.92654 -35.46297 -33.23695 -31.44405 -30.96804 -28.05992 -24.67337 -24.05503 -23.15506 -21.33511 -20.08819 -19.55254 -17.67179 -16.49170 -16.31869 -15.95499 -15.85995 -15.31049 -14.57029 -14.47115 -13.99339 -13.56874 -13.13071 -12.84385 -12.44932 -12.19510 -12.01079 -11.73310 -11.33777 -11.12780 -11.00344 -10.92724 -10.82231 -10.54699 -10.46338 -10.20385 -9.91436 -9.62835 -9.49420 -9.24647 -8.98450 -8.30596 -5.98024 -4.00257 2.63426 3.32783 3.37656 3.39742 3.51334 3.92178 4.45546 4.73782 4.90265 4.92630 5.09084 5.28071 5.37407 5.42830 5.45859 5.58093 5.67485 5.72493 5.79255 5.91873 5.99565 6.01772 6.16923 6.28443 6.39612 6.53851 6.63807 6.98204 7.03251 7.23185 7.71383 7.89424 8.06491 8.38322 8.43480 9.07580 9.62724 11.12742 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.005933 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.638269 B = 4717.925183 C = 5411.003697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.011 3.989 10 C -0.105 4.105 11 C -0.078 4.078 12 H 0.104 0.896 13 C 0.491 3.509 14 O -0.535 6.535 15 O -0.488 6.488 16 C -0.071 4.071 17 C -0.164 4.164 18 C 0.064 3.936 19 O -0.389 6.389 20 C 0.062 3.938 21 C -0.153 4.153 22 H 0.260 0.740 23 H 0.045 0.955 24 H 0.015 0.985 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.396 0.604 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -13.437 0.516 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.025 4.025 10 C -0.143 4.143 11 C -0.097 4.097 12 H 0.121 0.879 13 C 0.335 3.665 14 O -0.427 6.427 15 O -0.297 6.297 16 C -0.089 4.089 17 C -0.201 4.201 18 C -0.013 4.013 19 O -0.307 6.307 20 C -0.014 4.014 21 C -0.190 4.190 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.254 0.746 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.776 -13.623 0.850 14.162 hybrid contribution 0.078 1.189 -0.810 1.441 sum 3.854 -12.434 0.040 13.017 Atomic orbital electron populations 1.69960 1.05946 1.26547 1.50671 1.24990 0.94816 0.99059 0.95430 0.86712 0.79624 0.83399 0.78554 1.20348 1.21313 1.20299 1.21202 0.92845 0.91214 1.50823 0.92966 1.19363 0.93861 0.90529 0.98790 1.21767 0.99190 0.91853 1.01481 1.21305 0.96910 0.98586 0.92907 0.87852 1.23593 0.77066 0.77827 0.87965 1.90571 1.66346 1.33124 1.52630 1.84915 1.49340 1.51155 1.44317 1.21038 0.96604 0.93163 0.98145 1.22518 0.98920 0.94621 1.04068 1.22546 0.93863 0.98287 0.86558 1.87889 1.63842 1.41334 1.37685 1.22575 0.92794 0.84143 1.01916 1.22316 0.99674 0.99179 0.97856 0.93037 0.93710 0.96641 0.91338 0.92971 0.74634 0.90505 0.91628 0.88570 0.93365 0.89266 0.93334 0.88969 0.89795 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 9 C 0.01 0.28 4.61 -27.89 -0.13 0.15 16 10 C -0.11 -2.04 4.40 -26.73 -0.12 -2.16 16 11 C -0.08 -1.28 1.92 -91.77 -0.18 -1.46 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 C 0.49 8.48 7.32 36.00 0.26 8.75 16 14 O -0.54 -9.58 14.45 -18.76 -0.27 -9.85 16 15 O -0.49 -8.39 10.58 -39.26 -0.42 -8.80 16 16 C -0.07 -1.00 1.49 -90.43 -0.13 -1.14 16 17 C -0.16 -2.18 5.06 -26.58 -0.13 -2.31 16 18 C 0.06 0.77 6.84 37.21 0.25 1.02 16 19 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 20 C 0.06 0.72 6.84 37.20 0.25 0.98 16 21 C -0.15 -1.93 4.98 -26.59 -0.13 -2.07 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.04 1.17 5.47 -51.93 -0.28 0.89 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 1.25 6.26 -51.93 -0.32 0.93 16 26 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 27 H 0.40 4.88 9.10 45.56 0.41 5.30 16 28 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 1.39 5.63 -51.93 -0.29 1.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.05 6.51 -51.93 -0.34 0.71 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -31.72 288.38 -6.06 -37.78 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.59 Total: 2.82 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.46 Total: -11.48 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.70 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.07 Total: -24.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.72 -6.06 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696827517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.534 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds