Wall clock time and date at job start Mon Mar 30 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48505 * 109.47081 * 240.00157 * 3 2 1 5 5 H 1.48499 * 109.47390 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47367 * 120.00181 * 3 2 1 7 7 C 1.37881 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47437 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47608 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46495 * 304.99850 * 11 10 9 13 13 C 1.50697 * 109.46796 * 64.99682 * 11 10 9 14 14 O 1.20833 * 119.99747 * 120.00770 * 13 11 10 15 15 O 1.34230 * 120.00262 * 299.72392 * 13 11 10 16 16 C 1.52996 * 109.47255 * 185.00015 * 11 10 9 17 17 C 1.53185 * 109.54132 * 179.82024 * 16 11 10 18 18 C 1.53106 * 109.15323 * 183.24176 * 17 16 11 19 19 O 1.42900 * 109.49120 * 57.47924 * 18 17 16 20 20 C 1.42908 * 114.09269 * 298.88644 * 19 18 17 21 21 C 1.53090 * 109.41702 * 61.15800 * 20 19 18 22 22 H 0.96989 * 120.00253 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46881 * 59.99910 * 9 7 2 24 24 H 1.09004 * 109.47405 * 300.00055 * 9 7 2 25 25 H 1.09000 * 109.47241 * 60.00030 * 10 9 7 26 26 H 1.09008 * 109.47494 * 300.00322 * 10 9 7 27 27 H 0.96699 * 116.99771 * 180.27188 * 15 13 11 28 28 H 1.08995 * 109.54572 * 299.99895 * 16 11 10 29 29 H 1.09000 * 109.52101 * 303.05828 * 17 16 11 30 30 H 1.09001 * 109.51901 * 63.24518 * 17 16 11 31 31 H 1.08997 * 109.40543 * 297.49177 * 18 17 16 32 32 H 1.09006 * 109.48660 * 177.51035 * 18 17 16 33 33 H 1.08998 * 109.47994 * 301.17336 * 20 19 18 34 34 H 1.08999 * 109.47698 * 181.13754 * 20 19 18 35 35 H 1.09001 * 109.52335 * 182.48133 * 21 20 19 36 36 H 1.09002 * 109.57613 * 62.32794 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7881 -5.0073 0.8404 13 6 0.7097 -5.1215 -1.2891 14 8 0.9292 -6.0501 -2.0305 15 8 -0.2247 -4.2128 -1.6101 16 6 2.4699 -6.1473 0.1245 17 6 1.7054 -7.4747 0.1286 18 6 2.6954 -8.6240 0.3359 19 8 3.4103 -8.4231 1.5568 20 6 4.1816 -7.2205 1.5901 21 6 3.2512 -6.0147 1.4354 22 1 -0.4850 0.8399 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5572 0.8897 25 1 2.8720 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 -0.6956 -4.3434 -2.4445 28 1 3.1630 -6.1282 -0.7165 29 1 0.9765 -7.4727 0.9390 30 1 1.1916 -7.6019 -0.8243 31 1 3.3983 -8.6512 -0.4967 32 1 2.1521 -9.5678 0.3839 33 1 4.9040 -7.2294 0.7739 34 1 4.7088 -7.1531 2.5417 35 1 3.8420 -5.0988 1.4163 36 1 2.5544 -5.9812 2.2730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696827517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:19 Heat of formation + Delta-G solvation = -186.001056 kcal Electronic energy + Delta-G solvation = -18144.680564 eV Core-core repulsion = 15205.956371 eV Total energy + Delta-G solvation = -2938.724193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.71511 -40.02146 -37.23593 -36.92532 -35.06948 -33.04513 -31.95752 -29.70521 -26.37201 -25.19297 -24.36962 -22.90896 -21.40347 -20.83464 -19.10084 -18.31551 -17.81483 -17.03396 -16.88565 -16.64622 -16.42151 -15.59426 -15.22300 -14.73899 -14.62591 -14.44070 -13.96020 -13.60654 -13.37199 -13.15439 -12.80611 -12.73881 -12.48973 -12.41661 -12.17614 -11.98979 -11.82241 -11.59640 -11.32611 -11.20326 -11.01877 -10.88099 -10.45179 -10.36913 -8.13019 -6.22571 1.24370 1.42463 1.44252 1.51952 2.25098 2.44491 3.01742 3.20239 3.55501 3.77754 3.89313 4.11344 4.22869 4.29605 4.36665 4.42520 4.48027 4.64398 4.79355 4.81582 4.86260 4.88503 4.97881 5.05890 5.13876 5.20717 5.35539 5.40848 5.59023 5.71562 5.86008 6.03762 6.30336 6.31889 6.95894 7.10573 7.44937 8.97779 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.005933 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.638269 B = 4717.925183 C = 5411.003697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.014 3.986 10 C -0.091 4.091 11 C -0.073 4.073 12 H 0.105 0.895 13 C 0.490 3.510 14 O -0.542 6.542 15 O -0.504 6.504 16 C -0.066 4.066 17 C -0.159 4.159 18 C 0.065 3.935 19 O -0.401 6.401 20 C 0.061 3.939 21 C -0.150 4.150 22 H 0.261 0.739 23 H 0.029 0.971 24 H -0.010 1.010 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.415 0.585 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -13.835 0.783 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.023 4.023 10 C -0.129 4.129 11 C -0.092 4.092 12 H 0.123 0.877 13 C 0.335 3.665 14 O -0.433 6.433 15 O -0.316 6.316 16 C -0.085 4.085 17 C -0.196 4.196 18 C -0.012 4.012 19 O -0.320 6.320 20 C -0.015 4.015 21 C -0.188 4.188 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.008 0.992 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.275 0.725 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.143 -14.032 1.106 14.986 hybrid contribution -0.397 1.304 -0.925 1.647 sum 4.746 -12.729 0.181 13.586 Atomic orbital electron populations 1.70094 1.07571 1.27463 1.51773 1.25872 0.95675 1.02904 0.95087 0.85633 0.78362 0.78789 0.79032 1.19515 1.21094 1.19234 1.21695 0.93406 0.92648 1.50313 0.92454 1.19256 0.94377 0.91929 0.96759 1.21520 0.98086 0.91329 1.01926 1.21272 0.97144 0.98075 0.92737 0.87660 1.23712 0.77035 0.77650 0.88118 1.90568 1.66575 1.33313 1.52876 1.84865 1.49607 1.51369 1.45758 1.21009 0.96029 0.92545 0.98897 1.22444 0.99135 0.94700 1.03365 1.22610 0.93719 0.98324 0.86514 1.87881 1.64067 1.41911 1.38174 1.22696 0.92476 0.82962 1.03370 1.22306 0.99725 1.00026 0.96729 0.93025 0.95313 0.99190 0.90097 0.93228 0.72491 0.90985 0.91655 0.89771 0.92775 0.87614 0.92424 0.87133 0.89615 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.01 0.68 4.61 29.84 0.14 0.82 16 10 C -0.09 -3.49 4.40 30.59 0.13 -3.36 16 11 C -0.07 -2.37 1.92 -11.54 -0.02 -2.39 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 C 0.49 16.79 7.32 71.23 0.52 17.31 16 14 O -0.54 -19.01 14.45 21.94 0.32 -18.70 16 15 O -0.50 -17.46 10.58 -51.41 -0.54 -18.00 16 16 C -0.07 -1.79 1.49 -10.67 -0.02 -1.80 16 17 C -0.16 -4.00 5.06 30.69 0.16 -3.85 16 18 C 0.06 1.42 6.84 72.02 0.49 1.91 16 19 O -0.40 -9.66 10.77 -148.98 -1.60 -11.26 16 20 C 0.06 1.26 6.84 72.01 0.49 1.76 16 21 C -0.15 -3.53 4.98 30.68 0.15 -3.38 16 22 H 0.26 14.82 8.31 -92.72 -0.77 14.05 16 23 H 0.03 1.53 5.47 -2.39 -0.01 1.52 16 24 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 25 H 0.08 2.87 6.26 -2.39 -0.01 2.86 16 26 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.41 10.23 9.10 -74.06 -0.67 9.56 16 28 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.35 5.63 -2.39 -0.01 2.33 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 1.98 6.51 -2.39 -0.02 1.96 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -66.56 288.38 3.63 -62.93 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.40 Total: 16.94 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 2.74 Total: -22.21 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.28 Total: -55.40 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.83 Total: -47.96 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.56 3.63 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696827517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.072 kcal (2) G-P(sol) polarization free energy of solvation -66.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds