Wall clock time and date at job start Mon Mar 30 2020 03:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.56094 * 2 1 4 4 C 1.54478 * 110.50982 * 237.32483 * 2 1 3 5 5 O 1.44422 * 104.80215 * 217.37388 * 4 2 1 6 6 C 1.44426 * 105.27395 * 40.51461 * 5 4 2 7 7 C 1.54487 * 104.80024 * 319.48506 * 6 5 4 8 8 H 1.09005 * 110.51082 * 265.19785 * 7 6 5 9 9 N 1.46500 * 110.50587 * 142.62784 * 7 6 5 10 10 C 1.34773 * 120.00429 * 86.45800 * 9 7 6 11 11 O 1.21443 * 119.99990 * 359.97438 * 10 9 7 12 12 C 1.48835 * 120.00277 * 179.72120 * 10 9 7 13 13 O 1.21503 * 119.99715 * 0.27324 * 12 10 9 14 14 N 1.34769 * 120.00097 * 180.27494 * 12 10 9 15 15 C 1.36126 * 119.99952 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 12 17 17 C 1.39582 * 119.99932 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00042 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46623 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47093 * 119.99742 * 19 17 15 22 22 H 1.48498 * 109.46958 * 240.00205 * 19 17 15 23 23 H 1.09001 * 109.47229 * 297.32113 * 1 2 3 24 24 H 1.09007 * 109.46861 * 57.31795 * 1 2 3 25 25 H 1.08998 * 109.47127 * 177.31567 * 1 2 3 26 26 H 1.09001 * 110.37536 * 98.54547 * 4 2 1 27 27 H 1.09004 * 110.37257 * 336.20580 * 4 2 1 28 28 H 1.09005 * 110.37393 * 200.66135 * 6 5 4 29 29 H 1.08994 * 110.47241 * 78.36291 * 6 5 4 30 30 H 0.97000 * 119.99459 * 266.44911 * 9 7 6 31 31 H 0.97000 * 120.00347 * 359.97438 * 14 12 10 32 32 H 0.96999 * 120.00097 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7811 -1.2179 5 8 3.2398 -1.4712 -0.7239 6 6 2.8757 -1.9422 0.5919 7 6 2.0714 -0.7813 1.2180 8 1 2.7215 -0.1484 1.8222 9 7 0.9662 -1.3006 2.0274 10 6 1.1725 -1.6294 3.3180 11 8 2.2747 -1.4956 3.8100 12 6 0.0482 -2.1511 4.1419 13 8 -1.0545 -2.2853 3.6496 14 7 0.2532 -2.4747 5.4341 15 6 -0.7750 -2.9523 6.1875 16 1 -1.7552 -3.0716 5.7498 17 6 -0.5625 -3.2879 7.5256 18 7 0.6266 -3.1437 8.0563 19 14 -1.9737 -3.9427 8.5598 20 1 -3.2044 -4.0103 7.7316 21 1 -1.6351 -5.3009 9.0559 22 1 -2.2034 -3.0370 9.7139 23 1 -0.3634 0.4717 0.9130 24 1 -0.3633 0.5550 -0.8650 25 1 -0.3633 -1.0265 -0.0481 26 1 2.3464 -0.0937 -2.0178 27 1 1.3285 -1.4969 -1.5702 28 1 3.7689 -2.1467 1.1824 29 1 2.2569 -2.8365 0.5190 30 1 0.0858 -1.4077 1.6343 31 1 1.1336 -2.3679 5.8270 32 1 0.7743 -3.3773 8.9861 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699820702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:57 Heat of formation + Delta-G solvation = -116.120207 kcal Electronic energy + Delta-G solvation = -17498.701941 eV Core-core repulsion = 14459.467665 eV Total energy + Delta-G solvation = -3039.234276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31944 -38.92265 -37.13610 -35.01657 -34.16987 -32.23173 -31.40512 -28.91256 -26.44353 -25.88154 -23.55775 -22.40842 -20.02879 -19.57588 -18.40928 -17.23590 -16.52714 -15.98712 -15.54592 -15.39053 -14.93828 -14.65250 -14.17663 -13.97072 -13.62409 -13.10036 -12.68392 -12.64333 -12.40402 -12.00087 -11.79721 -11.25080 -11.24028 -11.07923 -10.82700 -10.55000 -10.43636 -10.38530 -9.93256 -9.77015 -8.83981 -8.32973 -8.26763 -6.71120 -4.03382 2.37138 3.11261 3.12883 3.19034 3.30063 3.93996 4.06332 4.19609 4.33888 4.59569 4.80004 4.95810 5.07445 5.14600 5.19513 5.27018 5.41845 5.51854 5.64676 5.82076 5.85384 5.92498 6.01373 6.07226 6.52398 6.80713 7.27313 7.62801 7.81509 8.27420 8.55890 8.91751 9.27246 9.80369 10.43651 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052657 B = 0.005002 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.612381 B = 5596.612166 C = 5911.089067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 H 0.093 0.907 4 C 0.048 3.952 5 O -0.374 6.374 6 C 0.034 3.966 7 C 0.116 3.884 8 H 0.102 0.898 9 N -0.709 5.709 10 C 0.513 3.487 11 O -0.544 6.544 12 C 0.392 3.608 13 O -0.599 6.599 14 N -0.497 5.497 15 C -0.306 4.306 16 H 0.114 0.886 17 C 0.031 3.969 18 N -0.867 5.867 19 Si 0.939 3.061 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.413 0.587 31 H 0.405 0.595 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 4.572 -12.740 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 H 0.112 0.888 4 C -0.029 4.029 5 O -0.292 6.292 6 C -0.044 4.044 7 C 0.010 3.990 8 H 0.120 0.880 9 N -0.367 5.367 10 C 0.297 3.703 11 O -0.421 6.421 12 C 0.177 3.823 13 O -0.487 6.487 14 N -0.131 5.131 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.505 5.505 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.253 0.747 31 H 0.240 0.760 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.785 4.516 -12.618 13.520 hybrid contribution -0.611 -0.250 0.733 0.986 sum 1.175 4.266 -11.885 12.682 Atomic orbital electron populations 1.21802 0.93558 1.02581 1.03029 1.22770 0.97396 1.00641 0.94437 0.88845 1.23534 0.88212 0.95053 0.96132 1.89135 1.35010 1.73898 1.31136 1.23934 1.00512 0.96550 0.83429 1.22270 0.89217 0.95269 0.92206 0.87974 1.45945 1.13732 1.66095 1.10904 1.20790 0.89441 0.77580 0.82445 1.90692 1.25897 1.53338 1.72159 1.18908 0.88499 0.90696 0.84245 1.90579 1.24782 1.61479 1.71904 1.41579 1.13449 1.50228 1.07865 1.19945 0.92584 1.39113 0.91980 0.86873 1.25601 0.98057 0.96581 0.97336 1.69490 1.21702 1.44038 1.15281 0.85660 0.80350 0.78412 0.79162 1.18692 1.20241 1.20253 0.91103 0.91699 0.91806 0.88940 0.91926 0.88191 0.91602 0.74744 0.75976 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.79 37.16 0.29 -1.20 16 2 C -0.13 -1.40 3.72 -89.06 -0.33 -1.73 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.05 0.48 7.18 37.93 0.27 0.75 16 5 O -0.37 -4.95 11.65 -35.23 -0.41 -5.36 16 6 C 0.03 0.46 7.35 37.94 0.28 0.74 16 7 C 0.12 1.62 3.40 -66.36 -0.23 1.40 16 8 H 0.10 1.53 7.67 -51.93 -0.40 1.13 16 9 N -0.71 -11.80 4.64 -52.91 -0.25 -12.05 16 10 C 0.51 10.90 7.86 -11.88 -0.09 10.80 16 11 O -0.54 -12.44 16.18 5.42 0.09 -12.36 16 12 C 0.39 9.73 7.82 -11.88 -0.09 9.64 16 13 O -0.60 -15.75 16.03 5.36 0.09 -15.66 16 14 N -0.50 -13.14 5.25 -11.59 -0.06 -13.21 16 15 C -0.31 -8.32 9.67 -15.14 -0.15 -8.47 16 16 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.01 13.03 55.53 0.72 -22.28 16 19 Si 0.94 19.82 29.56 -169.99 -5.02 14.79 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 23 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 28 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 30 H 0.41 6.51 5.27 -40.82 -0.22 6.29 16 31 H 0.40 10.79 7.35 -40.82 -0.30 10.49 16 32 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 LS Contribution 276.86 15.07 4.17 4.17 Total: -1.00 -30.18 276.86 -4.52 -34.70 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -3.70 Total: 14.61 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -0.14 Total: 12.64 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.42 Total: -47.54 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.24 Total: -33.37 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.18 -4.52 -34.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699820702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.422 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds