Wall clock time and date at job start Mon Mar 30 2020 03:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.56094 * 2 1 4 4 C 1.54478 * 110.50982 * 237.32483 * 2 1 3 5 5 O 1.44422 * 104.80215 * 217.37388 * 4 2 1 6 6 C 1.44426 * 105.27395 * 40.51461 * 5 4 2 7 7 C 1.54487 * 104.80024 * 319.48506 * 6 5 4 8 8 H 1.09005 * 110.51082 * 265.19785 * 7 6 5 9 9 N 1.46500 * 110.50587 * 142.62784 * 7 6 5 10 10 C 1.34773 * 120.00429 * 86.45800 * 9 7 6 11 11 O 1.21443 * 119.99990 * 359.97438 * 10 9 7 12 12 C 1.48835 * 120.00277 * 179.72120 * 10 9 7 13 13 O 1.21503 * 119.99715 * 0.27324 * 12 10 9 14 14 N 1.34769 * 120.00097 * 180.27494 * 12 10 9 15 15 C 1.36126 * 119.99952 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 12 17 17 C 1.39582 * 119.99932 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00042 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46623 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47093 * 119.99742 * 19 17 15 22 22 H 1.48498 * 109.46958 * 240.00205 * 19 17 15 23 23 H 1.09001 * 109.47229 * 297.32113 * 1 2 3 24 24 H 1.09007 * 109.46861 * 57.31795 * 1 2 3 25 25 H 1.08998 * 109.47127 * 177.31567 * 1 2 3 26 26 H 1.09001 * 110.37536 * 98.54547 * 4 2 1 27 27 H 1.09004 * 110.37257 * 336.20580 * 4 2 1 28 28 H 1.09005 * 110.37393 * 200.66135 * 6 5 4 29 29 H 1.08994 * 110.47241 * 78.36291 * 6 5 4 30 30 H 0.97000 * 119.99459 * 266.44911 * 9 7 6 31 31 H 0.97000 * 120.00347 * 359.97438 * 14 12 10 32 32 H 0.96999 * 120.00097 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0713 -0.7811 -1.2179 5 8 3.2398 -1.4712 -0.7239 6 6 2.8757 -1.9422 0.5919 7 6 2.0714 -0.7813 1.2180 8 1 2.7215 -0.1484 1.8222 9 7 0.9662 -1.3006 2.0274 10 6 1.1725 -1.6294 3.3180 11 8 2.2747 -1.4956 3.8100 12 6 0.0482 -2.1511 4.1419 13 8 -1.0545 -2.2853 3.6496 14 7 0.2532 -2.4747 5.4341 15 6 -0.7750 -2.9523 6.1875 16 1 -1.7552 -3.0716 5.7498 17 6 -0.5625 -3.2879 7.5256 18 7 0.6266 -3.1437 8.0563 19 14 -1.9737 -3.9427 8.5598 20 1 -3.2044 -4.0103 7.7316 21 1 -1.6351 -5.3009 9.0559 22 1 -2.2034 -3.0370 9.7139 23 1 -0.3634 0.4717 0.9130 24 1 -0.3633 0.5550 -0.8650 25 1 -0.3633 -1.0265 -0.0481 26 1 2.3464 -0.0937 -2.0178 27 1 1.3285 -1.4969 -1.5702 28 1 3.7689 -2.1467 1.1824 29 1 2.2569 -2.8365 0.5190 30 1 0.0858 -1.4077 1.6343 31 1 1.1336 -2.3679 5.8270 32 1 0.7743 -3.3773 8.9861 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699820702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:56 Heat of formation + Delta-G solvation = -139.690764 kcal Electronic energy + Delta-G solvation = -17499.724037 eV Core-core repulsion = 14459.467665 eV Total energy + Delta-G solvation = -3040.256372 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.70526 -40.42540 -38.96174 -36.58865 -35.88449 -33.60136 -33.19323 -30.12829 -27.81785 -27.27410 -25.17495 -23.60029 -21.50485 -20.89444 -20.41429 -18.92182 -17.92620 -17.18972 -17.09162 -16.74703 -16.44021 -16.23011 -15.73020 -15.59044 -14.86572 -14.64043 -14.43159 -13.69217 -13.66637 -13.32770 -13.17826 -12.97757 -12.58308 -12.34930 -12.11050 -12.07655 -11.99452 -11.74334 -11.68610 -10.90866 -10.30898 -10.28392 -10.23473 -8.67287 -6.12133 0.55673 1.41304 1.45711 1.56743 1.74445 2.27946 2.33902 2.95484 3.13621 3.26295 3.38670 3.71029 3.80237 4.00886 4.07754 4.17755 4.41719 4.62957 4.65351 4.72187 4.80991 4.93309 5.08392 5.23803 5.24740 5.25861 5.66082 5.72309 6.11901 6.35279 6.78646 6.98072 7.26052 7.77883 8.48689 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052657 B = 0.005002 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.612381 B = 5596.612166 C = 5911.089067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 H 0.111 0.889 4 C 0.045 3.955 5 O -0.386 6.386 6 C 0.038 3.962 7 C 0.108 3.892 8 H 0.093 0.907 9 N -0.686 5.686 10 C 0.519 3.481 11 O -0.563 6.563 12 C 0.388 3.612 13 O -0.616 6.616 14 N -0.510 5.510 15 C -0.344 4.344 16 H 0.100 0.900 17 C -0.004 4.004 18 N -0.895 5.895 19 Si 1.011 2.989 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.266 1.266 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.419 0.581 31 H 0.401 0.599 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 5.004 -13.794 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 H 0.130 0.870 4 C -0.031 4.031 5 O -0.304 6.304 6 C -0.041 4.041 7 C 0.003 3.997 8 H 0.111 0.889 9 N -0.343 5.343 10 C 0.302 3.698 11 O -0.442 6.442 12 C 0.173 3.827 13 O -0.506 6.506 14 N -0.143 5.143 15 C -0.474 4.474 16 H 0.118 0.882 17 C -0.208 4.208 18 N -0.533 5.533 19 Si 0.831 3.169 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.191 1.191 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.260 0.740 31 H 0.235 0.765 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.264 4.962 -13.716 14.641 hybrid contribution -0.411 -0.333 0.926 1.066 sum 0.852 4.629 -12.791 13.629 Atomic orbital electron populations 1.21810 0.92903 1.02647 1.03624 1.22793 0.97846 1.01036 0.92535 0.87044 1.23782 0.87516 0.95503 0.96330 1.89131 1.36522 1.74271 1.30466 1.23782 1.00015 0.96270 0.83999 1.22532 0.88382 0.95794 0.93020 0.88903 1.45880 1.14932 1.64135 1.09345 1.20161 0.88005 0.77966 0.83641 1.90687 1.26042 1.54518 1.72906 1.19563 0.89296 0.89675 0.84140 1.90546 1.25880 1.61907 1.72263 1.41669 1.13141 1.50962 1.08550 1.20031 0.92465 1.41711 0.93213 0.88229 1.26545 1.00740 0.95832 0.97722 1.69553 1.23427 1.44231 1.16083 0.84632 0.76785 0.78160 0.77288 1.18707 1.19109 1.19091 0.92541 0.88875 0.92220 0.86159 0.90956 0.88993 0.91892 0.74012 0.76465 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 7.79 71.98 0.56 -2.04 16 2 C -0.12 -2.25 3.72 -9.78 -0.04 -2.29 16 3 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.04 0.76 7.18 72.48 0.52 1.28 16 5 O -0.39 -9.43 11.65 -148.98 -1.74 -11.17 16 6 C 0.04 1.00 7.35 72.49 0.53 1.53 16 7 C 0.11 2.87 3.40 46.01 0.16 3.03 16 8 H 0.09 2.71 7.67 -2.38 -0.02 2.69 16 9 N -0.69 -22.47 4.64 -439.64 -2.04 -24.51 16 10 C 0.52 22.25 7.86 87.08 0.68 22.94 16 11 O -0.56 -26.07 16.18 -3.54 -0.06 -26.13 16 12 C 0.39 19.66 7.82 87.08 0.68 20.34 16 13 O -0.62 -32.88 16.03 -3.73 -0.06 -32.94 16 14 N -0.51 -27.72 5.25 -308.87 -1.62 -29.34 16 15 C -0.34 -19.19 9.67 84.35 0.82 -18.38 16 16 H 0.10 5.70 7.15 -2.91 -0.02 5.68 16 17 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 18 N -0.90 -47.77 13.03 21.76 0.28 -47.49 16 19 Si 1.01 40.30 29.56 68.60 2.03 42.33 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H 0.06 1.14 7.73 -2.39 -0.02 1.13 16 24 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 1.07 6.99 -2.39 -0.02 1.05 16 26 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.12 7.83 -2.38 -0.02 1.10 16 28 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 30 H 0.42 12.86 5.27 -92.71 -0.49 12.37 16 31 H 0.40 22.07 7.35 -92.71 -0.68 21.39 16 32 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -65.13 276.86 1.18 -63.95 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.01 Total: 38.61 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 4.38 Total: 26.68 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.37 Total: -101.33 kcal Atomic # 8 Polarization: -68.38 SS G_CDS: -1.85 Total: -70.24 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -65.13 1.18 -63.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699820702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.739 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds