Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47446 * 110.99806 * 2 1 4 4 H 1.08998 * 109.89138 * 117.33646 * 3 2 1 5 5 C 1.50702 * 109.88790 * 356.30342 * 3 2 1 6 6 O 1.20824 * 119.99910 * 307.64963 * 5 3 2 7 7 O 1.34227 * 119.99405 * 127.64572 * 5 3 2 8 8 C 1.54319 * 107.36630 * 236.82089 * 3 2 1 9 9 C 1.55553 * 102.83168 * 337.66452 * 8 3 2 10 10 C 1.47844 * 111.00282 * 239.15169 * 2 1 3 11 11 H 1.08995 * 110.37189 * 27.53684 * 10 2 1 12 12 C 1.50703 * 110.37411 * 265.30204 * 10 2 1 13 13 O 1.21289 * 119.99986 * 0.02562 * 12 10 2 14 14 N 1.34773 * 119.99521 * 179.97438 * 12 10 2 15 15 C 1.37102 * 119.99818 * 180.02562 * 14 12 10 16 16 H 1.08003 * 119.99676 * 0.02562 * 15 14 12 17 17 C 1.38947 * 120.00166 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00142 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47184 * 60.00102 * 19 17 15 21 21 H 1.48499 * 109.47269 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46982 * 300.00207 * 19 17 15 23 23 H 1.09001 * 109.47249 * 69.52868 * 1 2 3 24 24 H 1.09008 * 109.46966 * 189.52631 * 1 2 3 25 25 H 1.08999 * 109.47573 * 309.52585 * 1 2 3 26 26 H 0.96702 * 116.99918 * 180.02562 * 7 5 3 27 27 H 1.09001 * 110.70585 * 96.01758 * 8 3 2 28 28 H 1.08999 * 110.70911 * 219.24698 * 8 3 2 29 29 H 1.08996 * 111.01242 * 277.57932 * 9 8 3 30 30 H 1.09004 * 110.98513 * 153.77795 * 9 8 3 31 31 H 0.96998 * 120.00569 * 0.02562 * 14 12 10 32 32 H 0.96999 * 120.00331 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 1 2.5696 1.5541 0.9105 5 6 0.8607 2.3619 -0.0914 6 8 0.0370 2.2544 -0.9688 7 8 0.7635 3.3589 0.8021 8 6 2.9149 1.5177 -1.2327 9 6 3.3048 0.0443 -1.5437 10 6 1.9988 -0.7077 -1.1850 11 1 1.2890 -0.6503 -2.0101 12 6 2.2949 -2.1464 -0.8479 13 8 2.0887 -2.5615 0.2729 14 7 2.7879 -2.9720 -1.7922 15 6 3.0568 -4.2810 -1.4858 16 1 2.8731 -4.6506 -0.4877 17 6 3.5655 -5.1321 -2.4592 18 7 3.7895 -4.6822 -3.6734 19 14 3.9325 -6.9154 -2.0414 20 1 2.6851 -7.5860 -1.5950 21 1 4.4635 -7.6063 -3.2439 22 1 4.9413 -6.9713 -0.9531 23 1 -0.3634 0.3594 -0.9628 24 1 -0.3633 -1.0136 0.1701 25 1 -0.3634 0.6540 0.7926 26 1 0.0172 3.9658 0.7032 27 1 2.3719 1.9586 -2.0688 28 1 3.7977 2.1093 -0.9904 29 1 4.1302 -0.2832 -0.9117 30 1 3.5499 -0.0803 -2.5985 31 1 2.9525 -2.6401 -2.6887 32 1 4.1450 -5.2762 -4.3529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703457675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = -110.310719 kcal Electronic energy + Delta-G solvation = -17854.603551 eV Core-core repulsion = 14815.621193 eV Total energy + Delta-G solvation = -3038.982357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04646 -38.86346 -37.11687 -36.04632 -33.86483 -32.07858 -31.18095 -29.82541 -25.89033 -24.97370 -23.48863 -21.76354 -20.34906 -18.94945 -18.37279 -17.82394 -16.87399 -16.29210 -15.80323 -15.22931 -14.63255 -14.37539 -13.88247 -13.52014 -13.44323 -13.04554 -12.60841 -12.55690 -12.03561 -11.65467 -11.63175 -11.45348 -11.15404 -11.07964 -10.96397 -10.81387 -10.50230 -10.41742 -10.18147 -9.45791 -8.50238 -7.96781 -7.92350 -6.38569 -3.79257 2.01087 2.89565 3.22394 3.27919 3.32353 3.88703 3.90543 4.25667 4.46660 4.76529 5.01933 5.08807 5.24185 5.29212 5.43193 5.50717 5.58413 5.68700 5.76353 5.97546 6.05823 6.14383 6.30326 6.33891 6.44131 6.97270 7.07617 7.57968 7.77227 8.09162 8.65771 9.21551 9.58046 10.10612 10.79208 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.054628 B = 0.005433 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.430217 B = 5152.626995 C = 5349.145236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.473 5.473 3 C 0.079 3.921 4 H 0.117 0.883 5 C 0.468 3.532 6 O -0.512 6.512 7 O -0.515 6.515 8 C -0.128 4.128 9 C -0.114 4.114 10 C 0.058 3.942 11 H 0.073 0.927 12 C 0.455 3.545 13 O -0.572 6.572 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.023 3.977 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.405 0.595 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 14.150 2.601 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.199 5.199 3 C -0.030 4.030 4 H 0.135 0.865 5 C 0.310 3.690 6 O -0.400 6.400 7 O -0.326 6.326 8 C -0.167 4.167 9 C -0.153 4.153 10 C -0.053 4.053 11 H 0.090 0.910 12 C 0.240 3.760 13 O -0.454 6.454 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.264 0.736 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.225 0.775 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.201 13.204 3.460 13.826 hybrid contribution -0.635 0.139 -1.162 1.331 sum -2.836 13.342 2.298 13.833 Atomic orbital electron populations 1.22990 0.86892 1.03198 1.01036 1.63814 1.08808 1.07303 1.39943 1.22546 0.92097 0.86045 1.02360 0.86490 1.24274 0.86772 0.80045 0.77940 1.90694 1.42331 1.71753 1.35232 1.84606 1.52810 1.40214 1.54993 1.22895 0.99066 0.98847 0.95873 1.22768 0.97341 0.92227 1.02933 1.22592 0.96691 0.94918 0.91127 0.90956 1.19433 0.84357 0.85965 0.86277 1.90524 1.56751 1.76531 1.21634 1.41816 1.56659 1.09830 1.11754 1.19650 1.39653 0.84932 0.98546 0.87990 1.25234 0.97330 1.00406 0.94892 1.69602 1.45258 1.37018 1.02552 0.85928 0.78921 0.81803 0.77619 1.19955 1.21020 1.19909 0.92413 0.90382 0.92471 0.73649 0.90421 0.89344 0.89408 0.89353 0.77522 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.18 60.06 0.49 0.60 16 2 N -0.47 -8.32 4.62 -226.44 -1.05 -9.37 16 3 C 0.08 1.09 3.87 -67.87 -0.26 0.83 16 4 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 5 C 0.47 6.05 5.43 36.01 0.20 6.24 16 6 O -0.51 -7.78 14.53 -18.75 -0.27 -8.05 16 7 O -0.52 -5.11 13.42 -39.25 -0.53 -5.63 16 8 C -0.13 -1.56 6.48 -24.68 -0.16 -1.72 16 9 C -0.11 -1.71 6.48 -24.36 -0.16 -1.87 16 10 C 0.06 1.08 2.84 -67.33 -0.19 0.89 16 11 H 0.07 1.30 7.63 -51.93 -0.40 0.90 16 12 C 0.46 10.92 7.15 -10.99 -0.08 10.84 16 13 O -0.57 -15.88 16.06 5.55 0.09 -15.80 16 14 N -0.56 -14.28 5.27 -10.96 -0.06 -14.33 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 19 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H 0.06 0.97 5.82 -51.93 -0.30 0.67 16 24 H 0.08 1.42 8.14 -51.92 -0.42 0.99 16 25 H 0.06 0.86 6.95 -51.93 -0.36 0.50 16 26 H 0.41 2.21 9.10 45.56 0.41 2.62 16 27 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 274.64 15.07 4.14 4.14 Total: -1.00 -33.07 274.64 -5.36 -38.44 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -2.99 Total: 10.42 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.40 Total: 7.87 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.38 Total: -47.44 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.71 Total: -29.48 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.07 -5.36 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703457675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.871 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds