Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47446 * 110.99806 * 2 1 4 4 H 1.08998 * 109.89138 * 117.33646 * 3 2 1 5 5 C 1.50702 * 109.88790 * 356.30342 * 3 2 1 6 6 O 1.20824 * 119.99910 * 307.64963 * 5 3 2 7 7 O 1.34227 * 119.99405 * 127.64572 * 5 3 2 8 8 C 1.54319 * 107.36630 * 236.82089 * 3 2 1 9 9 C 1.55553 * 102.83168 * 337.66452 * 8 3 2 10 10 C 1.47844 * 111.00282 * 239.15169 * 2 1 3 11 11 H 1.08995 * 110.37189 * 27.53684 * 10 2 1 12 12 C 1.50703 * 110.37411 * 265.30204 * 10 2 1 13 13 O 1.21289 * 119.99986 * 0.02562 * 12 10 2 14 14 N 1.34773 * 119.99521 * 179.97438 * 12 10 2 15 15 C 1.37102 * 119.99818 * 180.02562 * 14 12 10 16 16 H 1.08003 * 119.99676 * 0.02562 * 15 14 12 17 17 C 1.38947 * 120.00166 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00142 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47184 * 60.00102 * 19 17 15 21 21 H 1.48499 * 109.47269 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46982 * 300.00207 * 19 17 15 23 23 H 1.09001 * 109.47249 * 69.52868 * 1 2 3 24 24 H 1.09008 * 109.46966 * 189.52631 * 1 2 3 25 25 H 1.08999 * 109.47573 * 309.52585 * 1 2 3 26 26 H 0.96702 * 116.99918 * 180.02562 * 7 5 3 27 27 H 1.09001 * 110.70585 * 96.01758 * 8 3 2 28 28 H 1.08999 * 110.70911 * 219.24698 * 8 3 2 29 29 H 1.08996 * 111.01242 * 277.57932 * 9 8 3 30 30 H 1.09004 * 110.98513 * 153.77795 * 9 8 3 31 31 H 0.96998 * 120.00569 * 0.02562 * 14 12 10 32 32 H 0.96999 * 120.00331 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 1 2.5696 1.5541 0.9105 5 6 0.8607 2.3619 -0.0914 6 8 0.0370 2.2544 -0.9688 7 8 0.7635 3.3589 0.8021 8 6 2.9149 1.5177 -1.2327 9 6 3.3048 0.0443 -1.5437 10 6 1.9988 -0.7077 -1.1850 11 1 1.2890 -0.6503 -2.0101 12 6 2.2949 -2.1464 -0.8479 13 8 2.0887 -2.5615 0.2729 14 7 2.7879 -2.9720 -1.7922 15 6 3.0568 -4.2810 -1.4858 16 1 2.8731 -4.6506 -0.4877 17 6 3.5655 -5.1321 -2.4592 18 7 3.7895 -4.6822 -3.6734 19 14 3.9325 -6.9154 -2.0414 20 1 2.6851 -7.5860 -1.5950 21 1 4.4635 -7.6063 -3.2439 22 1 4.9413 -6.9713 -0.9531 23 1 -0.3634 0.3594 -0.9628 24 1 -0.3633 -1.0136 0.1701 25 1 -0.3634 0.6540 0.7926 26 1 0.0172 3.9658 0.7032 27 1 2.3719 1.9586 -2.0688 28 1 3.7977 2.1093 -0.9904 29 1 4.1302 -0.2832 -0.9117 30 1 3.5499 -0.0803 -2.5985 31 1 2.9525 -2.6401 -2.6887 32 1 4.1450 -5.2762 -4.3529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703457675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = -137.129680 kcal Electronic energy + Delta-G solvation = -17855.766508 eV Core-core repulsion = 14815.621193 eV Total energy + Delta-G solvation = -3040.145315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14913 -40.36801 -38.63145 -37.04618 -35.91029 -33.51514 -32.97678 -31.18456 -27.40729 -26.64532 -24.78207 -23.09345 -21.52730 -20.63827 -19.81991 -19.35474 -18.14525 -17.66238 -16.99146 -16.77783 -16.33063 -15.81564 -15.57145 -15.18743 -14.78842 -14.28063 -14.11745 -13.74173 -13.54476 -13.27603 -12.95294 -12.80971 -12.72819 -12.42885 -12.31945 -12.24284 -12.10264 -11.93242 -11.63056 -11.46679 -10.30597 -9.98951 -9.41388 -8.44193 -5.93004 1.00309 1.41461 1.43364 1.54158 1.98291 2.05621 2.29322 2.63354 3.19436 3.29261 3.53913 3.61774 3.99352 4.15822 4.20483 4.26329 4.28642 4.44500 4.56528 4.76911 4.81447 4.84622 4.97727 5.15110 5.42590 5.55350 5.61310 5.81105 6.03833 6.62755 6.93825 7.14917 7.58065 8.14342 8.72955 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.054628 B = 0.005433 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.430217 B = 5152.626995 C = 5349.145236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.499 5.499 3 C 0.073 3.927 4 H 0.131 0.869 5 C 0.479 3.521 6 O -0.538 6.538 7 O -0.505 6.505 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.064 3.936 11 H 0.078 0.922 12 C 0.452 3.548 13 O -0.616 6.616 14 N -0.569 5.569 15 C -0.334 4.334 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.919 5.919 19 Si 0.992 3.008 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.271 1.271 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.427 0.573 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.396 0.604 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 15.523 2.323 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.225 5.225 3 C -0.036 4.036 4 H 0.149 0.851 5 C 0.321 3.679 6 O -0.428 6.428 7 O -0.318 6.318 8 C -0.151 4.151 9 C -0.149 4.149 10 C -0.047 4.047 11 H 0.095 0.905 12 C 0.239 3.761 13 O -0.502 6.502 14 N -0.206 5.206 15 C -0.464 4.464 16 H 0.096 0.904 17 C -0.210 4.210 18 N -0.560 5.560 19 Si 0.816 3.184 20 H -0.199 1.199 21 H -0.194 1.194 22 H -0.196 1.196 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.289 0.711 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.230 0.770 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.626 14.625 3.174 15.054 hybrid contribution -0.844 -0.211 -1.013 1.336 sum -2.471 14.414 2.160 14.783 Atomic orbital electron populations 1.22874 0.86862 1.01913 1.01577 1.63636 1.09062 1.10075 1.39687 1.22615 0.92746 0.84338 1.03910 0.85113 1.23900 0.85929 0.80252 0.77803 1.90698 1.43105 1.72571 1.36387 1.84538 1.53924 1.39800 1.53564 1.22879 1.00037 0.96964 0.95248 1.22761 0.94891 0.93752 1.03520 1.22430 0.98943 0.91699 0.91677 0.90457 1.20424 0.82432 0.87999 0.85255 1.90482 1.58226 1.78011 1.23436 1.41853 1.57115 1.09464 1.12215 1.19622 1.41932 0.86645 0.98155 0.90412 1.25999 0.96362 1.04061 0.94570 1.69662 1.44905 1.38415 1.03029 0.85005 0.78639 0.76909 0.77873 1.19917 1.19430 1.19626 0.92420 0.92960 0.90936 0.71065 0.89759 0.85885 0.90470 0.88002 0.77012 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 8.18 127.69 1.04 1.56 16 2 N -0.50 -17.25 4.62 -870.31 -4.02 -21.28 16 3 C 0.07 1.84 3.87 44.51 0.17 2.01 16 4 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 5 C 0.48 11.09 5.43 71.24 0.39 11.48 16 6 O -0.54 -15.18 14.53 21.97 0.32 -14.86 16 7 O -0.51 -8.30 13.42 -51.39 -0.69 -8.99 16 8 C -0.11 -2.40 6.48 31.92 0.21 -2.19 16 9 C -0.11 -3.15 6.48 32.13 0.21 -2.94 16 10 C 0.06 2.38 2.84 44.64 0.13 2.50 16 11 H 0.08 2.77 7.63 -2.39 -0.02 2.75 16 12 C 0.45 22.29 7.15 87.66 0.63 22.92 16 13 O -0.62 -35.54 16.06 -3.06 -0.05 -35.59 16 14 N -0.57 -29.60 5.27 -306.98 -1.62 -31.21 16 15 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 16 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 17 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 18 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 19 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H 0.06 1.92 5.82 -2.39 -0.01 1.91 16 24 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.07 2.13 6.95 -2.39 -0.02 2.11 16 26 H 0.43 3.16 9.10 -74.06 -0.67 2.48 16 27 H 0.08 1.73 7.70 -2.39 -0.02 1.71 16 28 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.37 8.05 -2.39 -0.02 2.35 16 30 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 32 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -72.18 274.64 0.06 -72.12 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.24 Total: 27.00 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 4.05 Total: 16.95 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -5.36 Total: -101.70 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.42 Total: -59.44 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.18 0.06 -72.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703457675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.012 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds