Wall clock time and date at job start Mon Mar 30 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48670 * 111.11155 * 2 1 4 4 H 1.09007 * 110.40186 * 319.92041 * 3 2 1 5 5 C 1.50695 * 110.44350 * 82.25762 * 3 2 1 6 6 O 1.20823 * 120.00180 * 356.74778 * 5 3 2 7 7 O 1.34237 * 119.99922 * 176.74257 * 5 3 2 8 8 C 1.54381 * 104.67497 * 201.10404 * 3 2 1 9 9 C 1.54257 * 105.06182 * 23.76546 * 8 3 2 10 10 C 1.48558 * 110.99919 * 244.58218 * 2 1 3 11 11 H 1.08995 * 110.41473 * 40.14284 * 10 2 1 12 12 C 1.50702 * 110.41030 * 277.81627 * 10 2 1 13 13 O 1.21293 * 120.00255 * 1.65175 * 12 10 2 14 14 N 1.34777 * 119.99928 * 181.37084 * 12 10 2 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 10 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47047 * 89.99811 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00167 * 19 17 15 22 22 H 1.48499 * 109.46902 * 330.00508 * 19 17 15 23 23 H 1.09002 * 109.46969 * 175.42068 * 1 2 3 24 24 H 1.09007 * 109.46938 * 295.41639 * 1 2 3 25 25 H 1.08991 * 109.47274 * 55.41586 * 1 2 3 26 26 H 0.96697 * 117.00093 * 180.02562 * 7 5 3 27 27 H 1.09001 * 110.31581 * 264.87181 * 8 3 2 28 28 H 1.08997 * 110.41355 * 142.71345 * 8 3 2 29 29 H 1.08998 * 110.32567 * 241.10684 * 9 8 3 30 30 H 1.09002 * 110.40949 * 118.94422 * 9 8 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 14 12 10 32 32 H 0.96996 * 120.00330 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 1 1.4121 2.0230 -0.6578 5 6 2.0166 1.9465 1.3992 6 8 1.5682 1.2965 2.3137 7 8 2.5257 3.1670 1.6295 8 6 3.4451 1.2499 -0.5377 9 6 3.4431 -0.0541 -1.3617 10 6 2.0013 -0.5953 -1.2527 11 1 1.4086 -0.2729 -2.1086 12 6 2.0104 -2.0993 -1.1574 13 8 1.5868 -2.6464 -0.1612 14 7 2.4838 -2.8365 -2.1815 15 6 2.4868 -4.2049 -2.0972 16 1 2.1094 -4.6921 -1.2103 17 6 2.9753 -4.9650 -3.1527 18 7 3.4350 -4.3722 -4.2317 19 14 2.9801 -6.8294 -3.0376 20 1 1.7009 -7.3616 -3.5722 21 1 4.1120 -7.3716 -3.8313 22 1 3.1309 -7.2372 -1.6177 23 1 -0.3633 -1.0244 -0.0821 24 1 -0.3633 0.4411 0.9283 25 1 -0.3633 0.5833 -0.8460 26 1 2.5119 3.4831 2.5433 27 1 4.1519 1.1745 0.2886 28 1 3.6960 2.0991 -1.1734 29 1 4.1490 -0.7696 -0.9400 30 1 3.6918 0.1535 -2.4025 31 1 2.8225 -2.3990 -2.9782 32 1 3.7764 -4.9027 -4.9685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703457677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:10 Heat of formation + Delta-G solvation = -115.126075 kcal Electronic energy + Delta-G solvation = -17760.384870 eV Core-core repulsion = 14721.193703 eV Total energy + Delta-G solvation = -3039.191167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.51030 -38.97507 -37.04036 -35.96760 -33.89671 -32.11658 -31.19289 -29.76931 -25.92129 -24.92807 -23.34857 -21.52457 -20.44775 -19.07078 -18.02171 -17.73594 -16.91410 -16.13879 -15.68376 -15.01850 -14.60852 -14.27128 -13.81525 -13.66205 -13.50673 -13.32920 -12.64678 -12.15331 -12.02469 -11.71257 -11.51711 -11.44045 -11.33215 -11.06798 -10.86193 -10.63553 -10.37656 -10.28167 -10.19557 -9.47905 -8.57220 -8.04609 -7.93878 -6.40102 -3.80623 2.27979 2.84574 3.19298 3.28053 3.34507 3.88718 4.01958 4.27001 4.59065 4.76754 4.92326 5.09078 5.23165 5.26515 5.46369 5.54652 5.59815 5.69005 5.76484 5.91703 6.09623 6.29597 6.31585 6.37488 6.49840 6.93945 7.13774 7.57185 7.97757 8.07958 8.64086 9.20329 9.56232 10.08701 10.77726 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.048680 B = 0.005510 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.048453 B = 5080.136561 C = 5342.095439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.464 5.464 3 C 0.067 3.933 4 H 0.088 0.912 5 C 0.485 3.515 6 O -0.489 6.489 7 O -0.522 6.522 8 C -0.106 4.106 9 C -0.116 4.116 10 C 0.054 3.946 11 H 0.068 0.932 12 C 0.454 3.546 13 O -0.570 6.570 14 N -0.563 5.563 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.023 0.977 26 H 0.407 0.593 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.392 0.608 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 14.485 2.983 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.189 5.189 3 C -0.044 4.044 4 H 0.106 0.894 5 C 0.325 3.675 6 O -0.374 6.374 7 O -0.334 6.334 8 C -0.144 4.144 9 C -0.154 4.154 10 C -0.057 4.057 11 H 0.086 0.914 12 C 0.239 3.761 13 O -0.453 6.453 14 N -0.200 5.200 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.194 1.194 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.041 0.959 26 H 0.266 0.734 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.225 0.775 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.568 13.374 3.830 13.923 hybrid contribution -0.150 0.012 -0.598 0.616 sum -0.718 13.386 3.232 13.790 Atomic orbital electron populations 1.22567 0.86673 1.03567 1.00148 1.64668 1.09179 1.09856 1.35244 1.22237 0.99529 0.92683 0.89904 0.89436 1.23156 0.73933 0.78414 0.92003 1.90740 1.42148 1.58810 1.45676 1.84517 1.76840 1.34512 1.37492 1.22223 0.93317 0.98709 1.00183 1.22332 0.96027 0.96363 1.00698 1.22568 0.96227 0.95974 0.90980 0.91382 1.19405 0.84731 0.86837 0.85157 1.90549 1.50873 1.72343 1.31530 1.41819 1.55254 1.06782 1.16170 1.19702 1.38787 0.80914 1.03303 0.87940 1.25232 0.96921 1.00636 0.95075 1.69608 1.42066 1.36556 1.06191 0.85868 0.77721 0.82274 0.78500 1.20455 1.20949 1.19413 0.89551 0.91159 0.95887 0.73435 0.90483 0.89803 0.89793 0.89990 0.77505 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 60.06 0.55 0.86 16 2 N -0.46 -8.28 4.21 -225.15 -0.95 -9.23 16 3 C 0.07 0.91 2.79 -67.16 -0.19 0.72 16 4 H 0.09 0.99 7.91 -51.92 -0.41 0.58 16 5 C 0.49 6.74 7.45 36.00 0.27 7.01 16 6 O -0.49 -8.70 16.45 -18.75 -0.31 -9.01 16 7 O -0.52 -5.18 13.40 -39.28 -0.53 -5.71 16 8 C -0.11 -1.31 6.52 -25.35 -0.17 -1.47 16 9 C -0.12 -1.73 6.51 -25.35 -0.17 -1.89 16 10 C 0.05 0.98 2.68 -67.22 -0.18 0.80 16 11 H 0.07 1.10 7.97 -51.93 -0.41 0.68 16 12 C 0.45 10.86 6.85 -10.98 -0.08 10.78 16 13 O -0.57 -15.99 15.32 5.55 0.08 -15.91 16 14 N -0.56 -14.17 5.25 -10.96 -0.06 -14.23 16 15 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 16 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 19 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.09 1.63 7.40 -51.93 -0.38 1.25 16 24 H 0.07 1.12 7.42 -51.92 -0.39 0.74 16 25 H 0.02 0.31 7.98 -51.93 -0.41 -0.10 16 26 H 0.41 2.31 9.10 45.56 0.41 2.73 16 27 H 0.08 0.96 7.85 -51.93 -0.41 0.56 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.42 7.85 -51.93 -0.41 1.02 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -34.23 278.78 -5.14 -39.37 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.09 Total: 9.17 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.20 Total: 8.88 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.28 Total: -47.04 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.75 Total: -30.62 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.23 -5.14 -39.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703457677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.758 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds