Wall clock time and date at job start Mon Mar 30 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48670 * 111.11155 * 2 1 4 4 H 1.09007 * 110.40186 * 319.92041 * 3 2 1 5 5 C 1.50695 * 110.44350 * 82.25762 * 3 2 1 6 6 O 1.20823 * 120.00180 * 356.74778 * 5 3 2 7 7 O 1.34237 * 119.99922 * 176.74257 * 5 3 2 8 8 C 1.54381 * 104.67497 * 201.10404 * 3 2 1 9 9 C 1.54257 * 105.06182 * 23.76546 * 8 3 2 10 10 C 1.48558 * 110.99919 * 244.58218 * 2 1 3 11 11 H 1.08995 * 110.41473 * 40.14284 * 10 2 1 12 12 C 1.50702 * 110.41030 * 277.81627 * 10 2 1 13 13 O 1.21293 * 120.00255 * 1.65175 * 12 10 2 14 14 N 1.34777 * 119.99928 * 181.37084 * 12 10 2 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 10 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47047 * 89.99811 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00167 * 19 17 15 22 22 H 1.48499 * 109.46902 * 330.00508 * 19 17 15 23 23 H 1.09002 * 109.46969 * 175.42068 * 1 2 3 24 24 H 1.09007 * 109.46938 * 295.41639 * 1 2 3 25 25 H 1.08991 * 109.47274 * 55.41586 * 1 2 3 26 26 H 0.96697 * 117.00093 * 180.02562 * 7 5 3 27 27 H 1.09001 * 110.31581 * 264.87181 * 8 3 2 28 28 H 1.08997 * 110.41355 * 142.71345 * 8 3 2 29 29 H 1.08998 * 110.32567 * 241.10684 * 9 8 3 30 30 H 1.09002 * 110.40949 * 118.94422 * 9 8 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 14 12 10 32 32 H 0.96996 * 120.00330 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 1 1.4121 2.0230 -0.6578 5 6 2.0166 1.9465 1.3992 6 8 1.5682 1.2965 2.3137 7 8 2.5257 3.1670 1.6295 8 6 3.4451 1.2499 -0.5377 9 6 3.4431 -0.0541 -1.3617 10 6 2.0013 -0.5953 -1.2527 11 1 1.4086 -0.2729 -2.1086 12 6 2.0104 -2.0993 -1.1574 13 8 1.5868 -2.6464 -0.1612 14 7 2.4838 -2.8365 -2.1815 15 6 2.4868 -4.2049 -2.0972 16 1 2.1094 -4.6921 -1.2103 17 6 2.9753 -4.9650 -3.1527 18 7 3.4350 -4.3722 -4.2317 19 14 2.9801 -6.8294 -3.0376 20 1 1.7009 -7.3616 -3.5722 21 1 4.1120 -7.3716 -3.8313 22 1 3.1309 -7.2372 -1.6177 23 1 -0.3633 -1.0244 -0.0821 24 1 -0.3633 0.4411 0.9283 25 1 -0.3633 0.5833 -0.8460 26 1 2.5119 3.4831 2.5433 27 1 4.1519 1.1745 0.2886 28 1 3.6960 2.0991 -1.1734 29 1 4.1490 -0.7696 -0.9400 30 1 3.6918 0.1535 -2.4025 31 1 2.8225 -2.3990 -2.9782 32 1 3.7764 -4.9027 -4.9685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703457677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:09 Heat of formation + Delta-G solvation = -143.235421 kcal Electronic energy + Delta-G solvation = -17761.603783 eV Core-core repulsion = 14721.193703 eV Total energy + Delta-G solvation = -3040.410080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.65065 -40.44585 -38.61500 -36.99108 -35.93277 -33.53936 -32.96804 -31.10755 -27.41947 -26.58595 -24.67380 -22.84438 -21.52053 -20.75651 -19.88254 -18.93774 -18.22565 -17.32851 -17.17297 -16.51020 -16.16984 -15.89159 -15.35826 -15.05971 -14.94279 -14.76763 -14.10974 -13.52112 -13.40305 -13.17827 -12.95685 -12.89100 -12.65862 -12.42719 -12.41064 -12.15406 -12.10214 -11.76615 -11.48599 -11.38558 -10.32089 -9.98988 -9.46252 -8.45401 -5.93681 1.23684 1.38273 1.42245 1.54540 1.86130 2.05853 2.31137 2.83518 3.18814 3.41268 3.50331 3.72362 3.93963 4.09847 4.29193 4.36052 4.38552 4.46036 4.65306 4.68198 4.94306 4.98005 5.07294 5.16353 5.42102 5.63535 5.68435 5.91328 6.04028 6.62753 7.07169 7.14857 7.58057 8.15223 8.71882 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.048680 B = 0.005510 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.048453 B = 5080.136561 C = 5342.095439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.503 5.503 3 C 0.065 3.935 4 H 0.125 0.875 5 C 0.493 3.507 6 O -0.539 6.539 7 O -0.504 6.504 8 C -0.095 4.095 9 C -0.112 4.112 10 C 0.062 3.938 11 H 0.095 0.905 12 C 0.449 3.551 13 O -0.621 6.621 14 N -0.568 5.568 15 C -0.334 4.334 16 H 0.074 0.926 17 C -0.008 4.008 18 N -0.917 5.917 19 Si 0.990 3.010 20 H -0.271 1.271 21 H -0.268 1.268 22 H -0.277 1.277 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.428 0.572 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.398 0.602 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 16.434 1.704 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.229 5.229 3 C -0.045 4.045 4 H 0.142 0.858 5 C 0.335 3.665 6 O -0.428 6.428 7 O -0.317 6.317 8 C -0.133 4.133 9 C -0.151 4.151 10 C -0.050 4.050 11 H 0.113 0.887 12 C 0.236 3.764 13 O -0.507 6.507 14 N -0.205 5.205 15 C -0.464 4.464 16 H 0.092 0.908 17 C -0.208 4.208 18 N -0.558 5.558 19 Si 0.814 3.186 20 H -0.196 1.196 21 H -0.193 1.193 22 H -0.202 1.202 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.289 0.711 27 H 0.090 0.910 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.232 0.768 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.120 15.383 2.528 15.590 hybrid contribution -0.349 -0.520 -0.155 0.645 sum -0.229 14.863 2.373 15.053 Atomic orbital electron populations 1.22444 0.86535 1.01831 1.01539 1.64489 1.09799 1.13129 1.35473 1.22394 1.00597 0.90893 0.90588 0.85806 1.23222 0.72864 0.78831 0.91601 1.90739 1.44573 1.60378 1.47082 1.84456 1.75533 1.32375 1.39354 1.22260 0.92263 0.98577 1.00203 1.22342 0.92922 0.96940 1.02872 1.22446 0.99003 0.91247 0.92266 0.88719 1.20545 0.82536 0.89634 0.83722 1.90510 1.52592 1.74241 1.33330 1.41836 1.55711 1.06153 1.16829 1.19614 1.40919 0.82603 1.03236 0.90814 1.25950 0.95855 1.04644 0.94373 1.69653 1.41625 1.38082 1.06409 0.84977 0.78371 0.77143 0.78132 1.19630 1.19310 1.20183 0.93208 0.91232 0.92513 0.71052 0.91027 0.85395 0.92763 0.87026 0.76797 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 9.12 127.69 1.16 1.97 16 2 N -0.50 -17.50 4.21 -866.25 -3.65 -21.15 16 3 C 0.06 1.57 2.79 44.29 0.12 1.69 16 4 H 0.12 2.15 7.91 -2.38 -0.02 2.13 16 5 C 0.49 12.58 7.45 71.23 0.53 13.11 16 6 O -0.54 -18.92 16.45 21.97 0.36 -18.56 16 7 O -0.50 -8.25 13.40 -51.48 -0.69 -8.94 16 8 C -0.10 -1.99 6.52 31.49 0.21 -1.78 16 9 C -0.11 -3.11 6.51 31.49 0.21 -2.90 16 10 C 0.06 2.16 2.68 44.32 0.12 2.28 16 11 H 0.10 2.80 7.97 -2.39 -0.02 2.79 16 12 C 0.45 22.06 6.85 87.66 0.60 22.66 16 13 O -0.62 -36.63 15.32 -3.07 -0.05 -36.67 16 14 N -0.57 -29.26 5.25 -306.98 -1.61 -30.87 16 15 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 16 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 17 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 18 N -0.92 -48.86 13.05 21.66 0.28 -48.57 16 19 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H 0.05 1.95 7.40 -2.39 -0.02 1.93 16 24 H 0.07 2.23 7.42 -2.38 -0.02 2.21 16 25 H 0.06 1.42 7.98 -2.39 -0.02 1.40 16 26 H 0.43 3.52 9.10 -74.06 -0.67 2.85 16 27 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 28 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.82 7.85 -2.39 -0.02 1.80 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 32 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -77.54 278.78 0.66 -76.88 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.25 Total: 23.97 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 4.23 Total: 18.65 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.98 Total: -100.60 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: -0.38 Total: -64.17 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -77.54 0.66 -76.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703457677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.351 kcal (2) G-P(sol) polarization free energy of solvation -77.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds