Wall clock time and date at job start Mon Mar 30 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99889 * 2 1 4 4 H 1.09000 * 112.91103 * 18.75171 * 3 2 1 5 5 C 1.53786 * 113.61403 * 150.00166 * 3 2 1 6 6 C 1.53781 * 87.17350 * 89.15805 * 5 3 2 7 7 H 1.08997 * 113.61223 * 270.84552 * 6 5 3 8 8 N 1.46499 * 113.61225 * 139.93836 * 6 5 3 9 9 C 1.34783 * 119.99531 * 155.00207 * 8 6 5 10 10 O 1.21437 * 120.00305 * 359.97438 * 9 8 6 11 11 C 1.48832 * 119.99867 * 180.02562 * 9 8 6 12 12 O 1.21506 * 119.99966 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00215 * 179.97438 * 11 9 8 14 14 C 1.36117 * 120.00198 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99901 * 359.97438 * 14 13 11 16 16 C 1.39580 * 120.00017 * 180.02562 * 14 13 11 17 17 N 1.31017 * 120.00098 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00045 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46997 * 90.00134 * 18 16 14 20 20 H 1.48506 * 109.46943 * 210.00448 * 18 16 14 21 21 H 1.48504 * 109.47038 * 330.00017 * 18 16 14 22 22 C 1.53782 * 87.08260 * 25.39213 * 6 5 3 23 23 H 1.09000 * 109.47296 * 300.00307 * 1 2 3 24 24 H 1.09003 * 109.47395 * 59.99914 * 1 2 3 25 25 H 1.08996 * 109.47570 * 179.97438 * 1 2 3 26 26 H 1.09002 * 113.61357 * 334.56722 * 5 3 2 27 27 H 1.09002 * 113.61608 * 203.74884 * 5 3 2 28 28 H 0.96997 * 120.00777 * 335.00229 * 8 6 5 29 29 H 0.96997 * 119.99344 * 0.02562 * 13 11 9 30 30 H 0.96993 * 120.00157 * 180.02562 * 17 16 14 31 31 H 1.08997 * 113.61668 * 89.11298 * 22 6 5 32 32 H 1.08998 * 113.61674 * 219.93807 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 0.3228 5 6 3.3755 1.3719 0.7045 6 6 4.0084 1.0342 -0.6558 7 1 4.1123 -0.0358 -0.8354 8 7 5.2380 1.7811 -0.9324 9 6 6.1557 1.2775 -1.7815 10 8 5.9635 0.2045 -2.3168 11 6 7.4051 2.0359 -2.0622 12 8 7.5981 3.1088 -1.5256 13 7 8.3230 1.5321 -2.9109 14 6 9.4659 2.2255 -3.1672 15 1 9.6371 3.1796 -2.6909 16 6 10.4163 1.7040 -4.0465 17 7 11.5166 2.3712 -4.2928 18 14 10.1200 0.0542 -4.8709 19 1 9.4086 0.2644 -6.1574 20 1 11.4223 -0.6115 -5.1283 21 1 9.2936 -0.8019 -3.9823 22 6 2.7558 1.6486 -1.3026 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.5170 0.5957 1.4566 27 1 3.6305 2.3667 1.0698 28 1 5.3918 2.6379 -0.5047 29 1 8.1691 0.6754 -3.3389 30 1 12.1768 2.0090 -4.9041 31 1 2.8401 2.7196 -1.4866 32 1 2.3977 1.0966 -2.1716 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706615837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:21 Heat of formation + Delta-G solvation = -88.981595 kcal Electronic energy + Delta-G solvation = -17046.842844 eV Core-core repulsion = 14008.785387 eV Total energy + Delta-G solvation = -3038.057457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19346 -39.05963 -37.32435 -36.13033 -34.37115 -32.64455 -31.81155 -27.07524 -26.22238 -25.85059 -24.53231 -22.18826 -20.05664 -19.42020 -18.89712 -17.27148 -16.65589 -16.01805 -15.71972 -15.42107 -15.04224 -14.78604 -14.48894 -13.83237 -13.46207 -12.98778 -12.87304 -12.59530 -12.45646 -12.34008 -12.15227 -11.68207 -11.27811 -11.06203 -10.71152 -10.54273 -10.53279 -10.08689 -9.76125 -9.74381 -8.79404 -8.40992 -8.39866 -6.58063 -3.99610 2.30131 3.05512 3.09022 3.11944 3.33800 3.41064 3.96784 4.12853 4.38516 4.45003 4.72989 4.81099 4.91026 5.06794 5.12175 5.14132 5.22621 5.39074 5.52772 5.64895 5.68809 5.88159 5.91375 6.10947 6.72909 6.98101 7.27219 7.68886 7.93176 8.26479 8.53055 8.75793 9.20287 9.62567 10.52032 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.051281 B = 0.004639 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.877250 B = 6034.917547 C = 6438.430151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.065 3.935 4 H 0.080 0.920 5 C -0.147 4.147 6 C 0.130 3.870 7 H 0.119 0.881 8 N -0.703 5.703 9 C 0.515 3.485 10 O -0.549 6.549 11 C 0.404 3.596 12 O -0.580 6.580 13 N -0.527 5.527 14 C -0.309 4.309 15 H 0.127 0.873 16 C 0.052 3.948 17 N -0.850 5.850 18 Si 0.876 3.124 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.172 4.172 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.411 0.589 29 H 0.384 0.616 30 H 0.281 0.719 31 H 0.094 0.906 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.562 -3.471 6.926 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.006 3.994 4 H 0.098 0.902 5 C -0.185 4.185 6 C 0.025 3.975 7 H 0.137 0.863 8 N -0.356 5.356 9 C 0.299 3.701 10 O -0.426 6.426 11 C 0.188 3.812 12 O -0.466 6.466 13 N -0.164 5.164 14 C -0.438 4.438 15 H 0.145 0.855 16 C -0.156 4.156 17 N -0.487 5.487 18 Si 0.700 3.300 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.184 1.184 22 C -0.211 4.211 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.247 0.753 29 H 0.219 0.781 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.236 -3.698 6.776 19.802 hybrid contribution -0.212 -0.591 -0.546 0.832 sum -18.447 -4.289 6.230 19.938 Atomic orbital electron populations 1.22810 0.80925 1.02819 0.99974 1.87907 1.19711 1.26479 1.94563 1.22931 0.94199 0.85259 0.97020 0.90237 1.23625 0.94038 1.03353 0.97520 1.22441 0.82196 0.98185 0.94685 0.86335 1.45670 1.19014 1.24381 1.46494 1.20665 0.84988 0.85524 0.78904 1.90675 1.78954 1.22357 1.50652 1.18874 0.85905 0.88662 0.87734 1.90617 1.78828 1.22769 1.54410 1.41833 1.17158 1.19975 1.37423 1.19563 0.93265 1.05744 1.25274 0.85507 1.25233 0.95040 0.98613 0.96687 1.69441 1.07838 1.38189 1.33236 0.86675 0.79267 0.83134 0.80878 1.18891 1.19525 1.18397 1.24037 0.96711 1.02100 0.98249 0.93986 0.93933 0.89568 0.89804 0.88249 0.75294 0.78139 0.90784 0.88749 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.37 -4.06 10.64 -35.23 -0.37 -4.43 16 3 C 0.06 0.63 4.38 -25.82 -0.11 0.52 16 4 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 5 C -0.15 -1.51 7.66 -25.92 -0.20 -1.71 16 6 C 0.13 1.79 4.18 -67.12 -0.28 1.51 16 7 H 0.12 1.87 7.47 -51.93 -0.39 1.48 16 8 N -0.70 -11.56 5.35 -53.64 -0.29 -11.85 16 9 C 0.51 10.81 7.87 -11.87 -0.09 10.71 16 10 O -0.55 -12.37 16.07 5.42 0.09 -12.28 16 11 C 0.40 9.90 7.82 -11.87 -0.09 9.80 16 12 O -0.58 -15.37 16.03 5.36 0.09 -15.29 16 13 N -0.53 -13.49 5.06 -11.59 -0.06 -13.55 16 14 C -0.31 -8.70 10.16 -15.15 -0.15 -8.86 16 15 H 0.13 3.97 7.37 -52.49 -0.39 3.58 16 16 C 0.05 1.41 5.51 -17.40 -0.10 1.32 16 17 N -0.85 -23.79 13.94 55.53 0.77 -23.01 16 18 Si 0.88 19.55 27.74 -169.99 -4.72 14.83 16 19 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.64 6.53 56.52 0.37 -5.27 16 22 C -0.17 -1.98 7.71 -25.82 -0.20 -2.18 16 23 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 28 H 0.41 6.24 8.19 -40.82 -0.33 5.91 16 29 H 0.38 9.26 5.22 -40.82 -0.21 9.05 16 30 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 283.07 15.07 4.27 4.27 Total: -1.00 -31.90 283.07 -4.21 -36.11 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.86 Total: 12.77 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -0.13 Total: 12.44 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.43 Total: -48.41 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.20 Total: -32.00 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.72 Total: 14.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.90 -4.21 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706615837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.872 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds