Wall clock time and date at job start Mon Mar 30 2020 03:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99889 * 2 1 4 4 H 1.09000 * 112.91103 * 18.75171 * 3 2 1 5 5 C 1.53786 * 113.61403 * 150.00166 * 3 2 1 6 6 C 1.53781 * 87.17350 * 89.15805 * 5 3 2 7 7 H 1.08997 * 113.61223 * 270.84552 * 6 5 3 8 8 N 1.46499 * 113.61225 * 139.93836 * 6 5 3 9 9 C 1.34783 * 119.99531 * 155.00207 * 8 6 5 10 10 O 1.21437 * 120.00305 * 359.97438 * 9 8 6 11 11 C 1.48832 * 119.99867 * 180.02562 * 9 8 6 12 12 O 1.21506 * 119.99966 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00215 * 179.97438 * 11 9 8 14 14 C 1.36117 * 120.00198 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99901 * 359.97438 * 14 13 11 16 16 C 1.39580 * 120.00017 * 180.02562 * 14 13 11 17 17 N 1.31017 * 120.00098 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00045 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46997 * 90.00134 * 18 16 14 20 20 H 1.48506 * 109.46943 * 210.00448 * 18 16 14 21 21 H 1.48504 * 109.47038 * 330.00017 * 18 16 14 22 22 C 1.53782 * 87.08260 * 25.39213 * 6 5 3 23 23 H 1.09000 * 109.47296 * 300.00307 * 1 2 3 24 24 H 1.09003 * 109.47395 * 59.99914 * 1 2 3 25 25 H 1.08996 * 109.47570 * 179.97438 * 1 2 3 26 26 H 1.09002 * 113.61357 * 334.56722 * 5 3 2 27 27 H 1.09002 * 113.61608 * 203.74884 * 5 3 2 28 28 H 0.96997 * 120.00777 * 335.00229 * 8 6 5 29 29 H 0.96997 * 119.99344 * 0.02562 * 13 11 9 30 30 H 0.96993 * 120.00157 * 180.02562 * 17 16 14 31 31 H 1.08997 * 113.61668 * 89.11298 * 22 6 5 32 32 H 1.08998 * 113.61674 * 219.93807 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 0.3228 5 6 3.3755 1.3719 0.7045 6 6 4.0084 1.0342 -0.6558 7 1 4.1123 -0.0358 -0.8354 8 7 5.2380 1.7811 -0.9324 9 6 6.1557 1.2775 -1.7815 10 8 5.9635 0.2045 -2.3168 11 6 7.4051 2.0359 -2.0622 12 8 7.5981 3.1088 -1.5256 13 7 8.3230 1.5321 -2.9109 14 6 9.4659 2.2255 -3.1672 15 1 9.6371 3.1796 -2.6909 16 6 10.4163 1.7040 -4.0465 17 7 11.5166 2.3712 -4.2928 18 14 10.1200 0.0542 -4.8709 19 1 9.4086 0.2644 -6.1574 20 1 11.4223 -0.6115 -5.1283 21 1 9.2936 -0.8019 -3.9823 22 6 2.7558 1.6486 -1.3026 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.5170 0.5957 1.4566 27 1 3.6305 2.3667 1.0698 28 1 5.3918 2.6379 -0.5047 29 1 8.1691 0.6754 -3.3389 30 1 12.1768 2.0090 -4.9041 31 1 2.8401 2.7196 -1.4866 32 1 2.3977 1.0966 -2.1716 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706615837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:20 Heat of formation + Delta-G solvation = -114.963720 kcal Electronic energy + Delta-G solvation = -17047.969513 eV Core-core repulsion = 14008.785387 eV Total energy + Delta-G solvation = -3039.184127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60098 -40.40713 -39.05587 -37.19172 -36.35316 -34.22053 -33.72252 -28.29192 -27.54229 -26.72488 -25.90579 -23.72612 -21.41324 -21.17395 -20.54572 -18.72418 -18.10160 -17.46735 -16.85140 -16.72011 -16.64016 -16.00726 -15.80716 -15.30589 -14.88860 -14.74459 -14.52980 -14.40499 -13.49687 -13.30848 -13.16882 -13.09525 -12.56890 -12.50847 -12.32375 -11.98736 -11.97866 -11.72131 -11.40306 -10.50187 -10.48524 -10.32489 -10.13846 -8.63543 -6.17454 0.50390 1.28472 1.32362 1.38448 1.75075 2.09465 2.26867 2.72869 3.04976 3.08603 3.49394 3.60618 3.79287 3.84835 4.09724 4.34414 4.55726 4.60942 4.72626 4.82762 4.88238 4.95236 5.01789 5.05053 5.25482 5.40848 5.72958 6.09482 6.30711 6.38529 6.58483 6.93425 7.13814 7.60888 8.50979 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.051281 B = 0.004639 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.877250 B = 6034.917547 C = 6438.430151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.074 3.926 4 H 0.112 0.888 5 C -0.135 4.135 6 C 0.110 3.890 7 H 0.096 0.904 8 N -0.680 5.680 9 C 0.522 3.478 10 O -0.564 6.564 11 C 0.406 3.594 12 O -0.602 6.602 13 N -0.532 5.532 14 C -0.340 4.340 15 H 0.079 0.921 16 C 0.012 3.988 17 N -0.891 5.891 18 Si 0.948 3.052 19 H -0.252 1.252 20 H -0.256 1.256 21 H -0.250 1.250 22 C -0.168 4.168 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.419 0.581 29 H 0.392 0.608 30 H 0.291 0.709 31 H 0.107 0.893 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 -4.499 7.336 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.016 3.984 4 H 0.129 0.871 5 C -0.173 4.173 6 C 0.006 3.994 7 H 0.114 0.886 8 N -0.332 5.332 9 C 0.304 3.696 10 O -0.444 6.444 11 C 0.191 3.809 12 O -0.490 6.490 13 N -0.170 5.170 14 C -0.469 4.469 15 H 0.097 0.903 16 C -0.193 4.193 17 N -0.529 5.529 18 Si 0.767 3.233 19 H -0.176 1.176 20 H -0.179 1.179 21 H -0.174 1.174 22 C -0.207 4.207 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.140 0.860 28 H 0.256 0.744 29 H 0.228 0.772 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.523 -4.702 7.213 22.256 hybrid contribution 0.375 -0.185 -0.560 0.699 sum -20.148 -4.887 6.653 21.774 Atomic orbital electron populations 1.23009 0.79190 1.03803 1.01133 1.87879 1.21736 1.27294 1.94580 1.22914 0.94488 0.85778 0.95237 0.87053 1.23638 0.93585 1.04592 0.95439 1.22805 0.81406 0.96950 0.98272 0.88576 1.45681 1.18765 1.24445 1.44300 1.19966 0.84493 0.85070 0.80037 1.90673 1.79132 1.22791 1.51763 1.19670 0.86677 0.88340 0.86236 1.90595 1.79632 1.23926 1.54802 1.41716 1.16815 1.20276 1.38240 1.19187 0.95431 1.05154 1.27150 0.90291 1.26068 0.94095 1.02650 0.96514 1.69542 1.08865 1.40357 1.34091 0.85600 0.80029 0.77687 0.79968 1.17558 1.17943 1.17417 1.24047 0.95325 1.02506 0.98840 0.92263 0.93258 0.88863 0.89667 0.85980 0.74370 0.77151 0.89881 0.87424 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.40 -7.76 10.64 -148.98 -1.58 -9.35 16 3 C 0.07 1.22 4.38 31.18 0.14 1.35 16 4 H 0.11 1.18 7.87 -2.39 -0.02 1.16 16 5 C -0.13 -2.37 7.66 31.12 0.24 -2.13 16 6 C 0.11 2.82 4.18 45.52 0.19 3.01 16 7 H 0.10 2.96 7.47 -2.39 -0.02 2.94 16 8 N -0.68 -21.42 5.35 -441.95 -2.36 -23.79 16 9 C 0.52 21.58 7.87 87.08 0.69 22.26 16 10 O -0.56 -25.00 16.07 -3.52 -0.06 -25.06 16 11 C 0.41 20.10 7.82 87.08 0.68 20.78 16 12 O -0.60 -32.56 16.03 -3.74 -0.06 -32.62 16 13 N -0.53 -27.62 5.06 -308.87 -1.56 -29.19 16 14 C -0.34 -19.86 10.16 84.35 0.86 -19.00 16 15 H 0.08 5.27 7.37 -2.91 -0.02 5.24 16 16 C 0.01 0.65 5.51 85.14 0.47 1.12 16 17 N -0.89 -50.98 13.94 21.76 0.30 -50.68 16 18 Si 0.95 39.89 27.74 68.60 1.90 41.79 16 19 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.25 -10.08 6.53 99.48 0.65 -9.43 16 22 C -0.17 -3.48 7.71 31.18 0.24 -3.24 16 23 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.12 1.62 8.12 -2.39 -0.02 1.60 16 28 H 0.42 11.99 8.19 -92.71 -0.76 11.23 16 29 H 0.39 18.77 5.22 -92.71 -0.48 18.29 16 30 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -70.97 283.07 1.17 -69.81 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.14 Total: 33.39 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 4.73 Total: 25.69 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -3.62 Total: -103.65 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.70 Total: -67.03 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -70.97 1.17 -69.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706615837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.157 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds