Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86796 * 120.00074 * 2 1 4 4 H 1.48504 * 109.47075 * 239.99870 * 3 2 1 5 5 H 1.48498 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47193 * 120.00424 * 3 2 1 7 7 C 1.39586 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00050 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99719 * 180.02562 * 9 7 2 11 11 O 1.21500 * 120.00545 * 0.02562 * 10 9 7 12 12 C 1.48833 * 119.99790 * 179.97438 * 10 9 7 13 13 O 1.21441 * 119.99659 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00302 * 180.02562 * 12 10 9 15 15 O 1.41596 * 120.00327 * 179.97438 * 14 12 10 16 16 C 1.42898 * 114.00162 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.53785 * 113.61570 * 274.13969 * 17 16 15 19 19 C 1.53956 * 87.02052 * 220.04627 * 18 17 16 20 20 C 1.53777 * 87.11087 * 25.36196 * 19 18 17 21 21 H 0.97002 * 119.99788 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00421 * 0.02562 * 9 7 2 23 23 H 0.96996 * 119.99938 * 0.02562 * 14 12 10 24 24 H 1.09002 * 109.47259 * 300.00377 * 16 15 14 25 25 H 1.09001 * 109.47074 * 60.00398 * 16 15 14 26 26 H 1.09001 * 112.85054 * 45.33390 * 17 16 15 27 27 H 1.09000 * 113.61195 * 334.56762 * 18 17 16 28 28 H 1.09001 * 113.61520 * 105.46896 * 18 17 16 29 29 H 1.09005 * 113.53676 * 270.80967 * 19 18 17 30 30 H 1.08993 * 113.66514 * 139.93360 * 19 18 17 31 31 H 1.09011 * 113.61618 * 220.09268 * 20 19 18 32 32 H 1.09000 * 113.69499 * 89.19666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 0.0006 6 1 3.0980 1.6963 1.2125 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0005 10 6 2.0014 -3.5549 -0.0005 11 8 3.2164 -3.5550 -0.0001 12 6 1.2572 -4.8438 0.0000 13 8 0.0428 -4.8437 0.0000 14 7 1.9310 -6.0110 0.0006 15 8 1.2230 -7.2373 0.0017 16 6 2.0629 -8.3934 0.0015 17 6 1.1957 -9.6538 0.0021 18 6 0.7633 -10.1035 1.4078 19 6 1.0152 -11.5471 0.9359 20 6 2.0051 -10.9586 -0.0832 21 1 -0.4850 0.8401 -0.0004 22 1 0.3575 -2.3877 -0.0005 23 1 2.9009 -6.0111 0.0009 24 1 2.6915 -8.3857 -0.8889 25 1 2.6928 -8.3850 0.8911 26 1 0.3737 -9.6025 -0.7120 27 1 1.4400 -9.7779 2.1977 28 1 -0.2825 -9.8924 1.6313 29 1 0.1430 -12.0139 0.4781 30 1 1.4873 -12.1775 1.6893 31 1 1.9604 -11.4370 -1.0617 32 1 3.0225 -10.8669 0.2970 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711132237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = -51.226204 kcal Electronic energy + Delta-G solvation = -16717.071846 eV Core-core repulsion = 13680.651585 eV Total energy + Delta-G solvation = -3036.420261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.48805 -39.08717 -37.38612 -36.36888 -34.36729 -31.91131 -31.33040 -28.33881 -25.90539 -25.79319 -23.12088 -22.83840 -19.89248 -19.37668 -18.46507 -17.98535 -16.51478 -16.10603 -15.65442 -15.33766 -14.94504 -14.66950 -14.35503 -13.95401 -13.48002 -12.84759 -12.77281 -12.70585 -12.27331 -11.94835 -11.81535 -11.21767 -11.06060 -10.88653 -10.65577 -10.60710 -10.46431 -10.40143 -10.33506 -9.76714 -8.55379 -8.38017 -8.29620 -6.72444 -4.05370 2.10013 2.41004 3.14473 3.15686 3.18516 3.97461 4.22510 4.24463 4.34531 4.43456 4.58475 4.80636 4.97450 5.09936 5.13010 5.20270 5.35379 5.44646 5.49011 5.62043 5.65067 5.82125 5.93933 5.97224 6.22819 7.10794 7.25779 7.52358 7.75972 8.27141 8.64112 8.89945 9.23194 9.75543 10.41981 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.077395 B = 0.003784 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.694747 B = 7398.259418 C = 7636.694914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.033 3.967 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.115 0.885 9 N -0.490 5.490 10 C 0.404 3.596 11 O -0.597 6.597 12 C 0.524 3.476 13 O -0.529 6.529 14 N -0.582 5.582 15 O -0.148 6.148 16 C 0.040 3.960 17 C -0.104 4.104 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.130 4.130 21 H 0.283 0.717 22 H 0.407 0.593 23 H 0.417 0.583 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -16.152 0.704 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.132 0.868 9 N -0.124 5.124 10 C 0.188 3.812 11 O -0.486 6.486 12 C 0.309 3.691 13 O -0.403 6.403 14 N -0.287 5.287 15 O -0.151 6.151 16 C -0.037 4.037 17 C -0.124 4.124 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.167 4.167 21 H 0.093 0.907 22 H 0.242 0.758 23 H 0.258 0.742 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.458 -16.014 0.705 16.217 hybrid contribution 0.401 0.486 -0.028 0.630 sum 2.858 -15.529 0.677 15.804 Atomic orbital electron populations 1.69481 1.06572 1.29696 1.44463 1.25628 0.95661 1.00577 0.95645 0.85737 0.78863 0.79072 0.79583 1.19279 1.20528 1.19283 1.19872 0.94046 0.81609 1.48203 0.86775 1.41484 1.10632 1.03865 1.56461 1.18424 0.87439 0.83277 0.92100 1.90591 1.12631 1.86271 1.59106 1.20924 0.88000 0.83474 0.76702 1.90712 1.13865 1.86911 1.48846 1.47290 1.08005 0.95669 1.77737 1.90555 1.22303 1.04996 1.97243 1.23035 0.94605 0.84840 1.01253 1.22530 0.99185 0.91350 0.99349 1.23026 1.02400 0.95651 0.96258 1.22836 0.99526 0.96671 0.98929 1.22906 0.98627 0.95118 1.00088 0.90678 0.75779 0.74213 0.92052 0.92057 0.87991 0.89872 0.90968 0.90050 0.91257 0.91013 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.90 13.03 55.53 0.72 -22.18 16 2 C 0.03 0.83 5.51 -17.40 -0.10 0.74 16 3 Si 0.94 19.72 29.56 -169.99 -5.02 14.70 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.31 -8.33 9.67 -15.15 -0.15 -8.48 16 8 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 9 N -0.49 -13.05 5.25 -11.59 -0.06 -13.11 16 10 C 0.40 10.20 7.82 -11.87 -0.09 10.11 16 11 O -0.60 -15.75 16.03 5.37 0.09 -15.67 16 12 C 0.52 12.08 8.01 -11.88 -0.10 11.99 16 13 O -0.53 -13.46 16.87 -12.75 -0.22 -13.67 16 14 N -0.58 -11.05 6.38 30.76 0.20 -10.85 16 15 O -0.15 -2.58 11.11 -29.64 -0.33 -2.91 16 16 C 0.04 0.48 6.05 37.16 0.22 0.71 16 17 C -0.10 -1.06 4.00 -89.81 -0.36 -1.42 16 18 C -0.14 -1.29 7.65 -25.82 -0.20 -1.49 16 19 C -0.14 -1.07 8.09 -25.83 -0.21 -1.28 16 20 C -0.13 -0.99 7.65 -25.92 -0.20 -1.19 16 21 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 22 H 0.41 10.93 7.35 -40.82 -0.30 10.63 16 23 H 0.42 6.93 8.00 -40.82 -0.33 6.61 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -31.03 287.54 -5.37 -36.40 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.91 Total: 13.27 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.17 Total: 9.69 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.86 Total: -46.14 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.46 Total: -32.25 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.03 -5.37 -36.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711132237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.826 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds