Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86796 * 120.00074 * 2 1 4 4 H 1.48504 * 109.47075 * 239.99870 * 3 2 1 5 5 H 1.48498 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47193 * 120.00424 * 3 2 1 7 7 C 1.39586 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00050 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99719 * 180.02562 * 9 7 2 11 11 O 1.21500 * 120.00545 * 0.02562 * 10 9 7 12 12 C 1.48833 * 119.99790 * 179.97438 * 10 9 7 13 13 O 1.21441 * 119.99659 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00302 * 180.02562 * 12 10 9 15 15 O 1.41596 * 120.00327 * 179.97438 * 14 12 10 16 16 C 1.42898 * 114.00162 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47319 * 180.02562 * 16 15 14 18 18 C 1.53785 * 113.61570 * 274.13969 * 17 16 15 19 19 C 1.53956 * 87.02052 * 220.04627 * 18 17 16 20 20 C 1.53777 * 87.11087 * 25.36196 * 19 18 17 21 21 H 0.97002 * 119.99788 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00421 * 0.02562 * 9 7 2 23 23 H 0.96996 * 119.99938 * 0.02562 * 14 12 10 24 24 H 1.09002 * 109.47259 * 300.00377 * 16 15 14 25 25 H 1.09001 * 109.47074 * 60.00398 * 16 15 14 26 26 H 1.09001 * 112.85054 * 45.33390 * 17 16 15 27 27 H 1.09000 * 113.61195 * 334.56762 * 18 17 16 28 28 H 1.09001 * 113.61520 * 105.46896 * 18 17 16 29 29 H 1.09005 * 113.53676 * 270.80967 * 19 18 17 30 30 H 1.08993 * 113.66514 * 139.93360 * 19 18 17 31 31 H 1.09011 * 113.61618 * 220.09268 * 20 19 18 32 32 H 1.09000 * 113.69499 * 89.19666 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 0.0006 6 1 3.0980 1.6963 1.2125 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0005 10 6 2.0014 -3.5549 -0.0005 11 8 3.2164 -3.5550 -0.0001 12 6 1.2572 -4.8438 0.0000 13 8 0.0428 -4.8437 0.0000 14 7 1.9310 -6.0110 0.0006 15 8 1.2230 -7.2373 0.0017 16 6 2.0629 -8.3934 0.0015 17 6 1.1957 -9.6538 0.0021 18 6 0.7633 -10.1035 1.4078 19 6 1.0152 -11.5471 0.9359 20 6 2.0051 -10.9586 -0.0832 21 1 -0.4850 0.8401 -0.0004 22 1 0.3575 -2.3877 -0.0005 23 1 2.9009 -6.0111 0.0009 24 1 2.6915 -8.3857 -0.8889 25 1 2.6928 -8.3850 0.8911 26 1 0.3737 -9.6025 -0.7120 27 1 1.4400 -9.7779 2.1977 28 1 -0.2825 -9.8924 1.6313 29 1 0.1430 -12.0139 0.4781 30 1 1.4873 -12.1775 1.6893 31 1 1.9604 -11.4370 -1.0617 32 1 3.0225 -10.8669 0.2970 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711132237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = -72.801290 kcal Electronic energy + Delta-G solvation = -16718.007412 eV Core-core repulsion = 13680.651585 eV Total energy + Delta-G solvation = -3037.355827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24142 -40.07395 -39.14121 -37.88621 -36.36713 -33.70313 -33.14350 -29.38054 -27.81503 -26.52239 -24.84804 -23.85097 -21.47457 -20.47909 -20.31540 -19.58349 -18.24776 -17.56468 -17.11657 -16.75755 -16.46419 -16.02019 -15.76431 -15.58051 -15.03980 -14.57414 -14.34375 -13.67865 -13.36638 -13.32770 -12.95751 -12.78106 -12.61485 -12.41815 -12.12190 -12.10353 -11.67388 -11.58050 -11.33247 -11.15364 -10.35908 -10.31905 -10.09301 -8.68295 -6.13554 0.51200 0.58423 1.44754 1.51069 1.58023 2.23979 2.30764 2.88406 3.12347 3.38837 3.60356 3.68200 3.89692 3.92022 3.96867 4.22670 4.37501 4.43947 4.81774 4.83048 4.88361 5.08604 5.08978 5.23846 5.26227 5.51222 5.61033 5.61556 5.95083 6.29672 6.79034 7.01456 7.20961 7.71765 8.47102 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.077395 B = 0.003784 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.694747 B = 7398.259418 C = 7636.694914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.003 4.003 3 Si 1.014 2.986 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.345 4.345 8 H 0.105 0.895 9 N -0.500 5.500 10 C 0.402 3.598 11 O -0.611 6.611 12 C 0.529 3.471 13 O -0.559 6.559 14 N -0.563 5.563 15 O -0.164 6.164 16 C 0.031 3.969 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.118 4.118 21 H 0.291 0.709 22 H 0.402 0.598 23 H 0.428 0.572 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 -16.894 0.699 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.208 4.208 3 Si 0.834 3.166 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.123 0.877 9 N -0.134 5.134 10 C 0.187 3.813 11 O -0.501 6.501 12 C 0.314 3.686 13 O -0.436 6.436 14 N -0.267 5.267 15 O -0.168 6.168 16 C -0.046 4.046 17 C -0.131 4.131 18 C -0.182 4.182 19 C -0.171 4.171 20 C -0.155 4.155 21 H 0.101 0.899 22 H 0.237 0.763 23 H 0.272 0.728 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.497 -16.801 0.700 17.175 hybrid contribution 0.092 0.542 -0.020 0.550 sum 3.589 -16.259 0.680 16.664 Atomic orbital electron populations 1.69552 1.07963 1.31161 1.44241 1.26618 0.96506 1.03629 0.94061 0.84701 0.77713 0.74417 0.79793 1.18659 1.19195 1.18665 1.20044 0.93956 0.82618 1.50786 0.87679 1.41583 1.10397 1.04459 1.56938 1.18799 0.87423 0.83965 0.91162 1.90560 1.13223 1.86805 1.59541 1.20318 0.87346 0.83929 0.77049 1.90694 1.14804 1.87451 1.50662 1.46908 1.08368 0.96132 1.75253 1.90575 1.23814 1.05116 1.97340 1.23479 0.95013 0.83310 1.02783 1.22656 0.99446 0.91358 0.99651 1.23103 1.01711 0.97444 0.95977 1.22817 0.99788 0.95499 0.99041 1.22906 0.98857 0.92924 1.00850 0.89879 0.76308 0.72817 0.90443 0.90510 0.88907 0.89745 0.92201 0.89534 0.89940 0.89886 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.36 13.03 21.77 0.28 -47.08 16 2 C 0.00 -0.16 5.51 85.14 0.47 0.31 16 3 Si 1.01 39.72 29.56 68.60 2.03 41.75 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.34 -19.00 9.67 84.35 0.82 -18.18 16 8 H 0.11 5.86 7.15 -2.91 -0.02 5.84 16 9 N -0.50 -27.29 5.25 -308.87 -1.62 -28.91 16 10 C 0.40 20.64 7.82 87.08 0.68 21.32 16 11 O -0.61 -32.48 16.03 -3.71 -0.06 -32.54 16 12 C 0.53 24.61 8.01 87.08 0.70 25.31 16 13 O -0.56 -28.88 16.87 13.84 0.23 -28.64 16 14 N -0.56 -21.03 6.38 -174.92 -1.12 -22.14 16 15 O -0.16 -5.60 11.11 -21.40 -0.24 -5.83 16 16 C 0.03 0.68 6.05 71.98 0.44 1.12 16 17 C -0.11 -2.07 4.00 -10.27 -0.04 -2.12 16 18 C -0.14 -2.56 7.65 31.18 0.24 -2.32 16 19 C -0.13 -1.70 8.09 31.18 0.25 -1.44 16 20 C -0.12 -1.48 7.65 31.12 0.24 -1.24 16 21 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 22 H 0.40 22.31 7.35 -92.71 -0.68 21.62 16 23 H 0.43 13.79 8.00 -92.71 -0.74 13.05 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.49 7.88 -2.39 -0.02 1.47 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 Total: -1.00 -66.39 287.54 3.03 -63.36 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: -0.27 Total: 37.27 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 3.79 Total: 22.76 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -2.45 Total: -98.13 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -0.06 Total: -67.02 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -66.39 3.03 -63.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711132237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.438 kcal (2) G-P(sol) polarization free energy of solvation -66.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds