Wall clock time and date at job start Mon Mar 30 2020 03:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86800 * 120.00472 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00565 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00304 * 3 2 1 6 6 H 1.48498 * 109.47278 * 150.00135 * 3 2 1 7 7 C 1.39584 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.36124 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00260 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00009 * 359.97438 * 10 9 7 12 12 C 1.48826 * 119.99936 * 179.97438 * 10 9 7 13 13 O 1.21440 * 119.99971 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99932 * 179.97438 * 12 10 9 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.46684 * 180.02562 * 15 14 12 17 17 O 1.42904 * 109.47221 * 65.00655 * 16 15 14 18 18 C 1.42898 * 113.99912 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49899 * 218.61761 * 18 17 16 20 20 C 1.52997 * 60.00102 * 252.51073 * 19 18 17 21 21 H 0.97005 * 119.99799 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99696 * 359.97438 * 9 7 2 23 23 H 0.96995 * 120.00018 * 0.27760 * 14 12 10 24 24 H 1.09000 * 109.47212 * 300.00355 * 15 14 12 25 25 H 1.09001 * 109.46577 * 60.00430 * 15 14 12 26 26 H 1.09000 * 109.46738 * 185.00167 * 16 15 14 27 27 H 1.08994 * 109.47465 * 305.00253 * 16 15 14 28 28 H 1.08995 * 115.55264 * 4.32491 * 18 17 16 29 29 H 1.09000 * 117.49576 * 0.02562 * 19 18 17 30 30 H 1.08998 * 117.50181 * 145.01779 * 19 18 17 31 31 H 1.08999 * 117.50182 * 252.50399 * 20 19 18 32 32 H 1.09003 * 117.51559 * 107.47812 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7001 6 1 3.5418 1.4400 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0016 10 6 2.0012 -3.5550 -0.0016 11 8 3.2162 -3.5550 -0.0011 12 6 1.2570 -4.8438 -0.0022 13 8 0.0426 -4.8437 -0.0022 14 7 1.9308 -6.0110 -0.0027 15 6 1.1982 -7.2797 -0.0027 16 6 2.1924 -8.4427 -0.0027 17 8 2.9347 -8.4348 1.2184 18 6 3.8962 -9.4869 1.3209 19 6 4.0731 -10.1517 2.6876 20 6 5.1553 -9.2153 2.1466 21 1 -0.4850 0.8401 0.0004 22 1 0.3574 -2.3877 -0.0016 23 1 2.9008 -6.0111 0.0014 24 1 0.5718 -7.3376 0.8875 25 1 0.5713 -7.3372 -0.8925 26 1 1.6504 -9.3841 -0.0923 27 1 2.8766 -8.3358 -0.8444 28 1 3.9999 -10.1167 0.4374 29 1 3.4557 -9.7867 3.5084 30 1 4.2930 -11.2191 2.7034 31 1 6.0874 -9.6666 1.8065 32 1 5.2504 -8.2339 2.6113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714992639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:50 Heat of formation + Delta-G solvation = -115.890283 kcal Electronic energy + Delta-G solvation = -16751.148896 eV Core-core repulsion = 13711.924591 eV Total energy + Delta-G solvation = -3039.224305 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.29085 -39.62631 -39.04360 -36.83374 -36.23420 -35.02806 -33.44904 -30.51574 -27.81423 -25.15381 -23.26841 -23.15173 -22.86821 -21.25402 -20.38036 -18.86733 -18.20776 -17.73761 -16.97148 -16.65391 -16.36962 -16.01712 -15.67021 -15.60352 -15.08215 -14.70843 -14.47873 -13.67508 -13.62007 -13.53144 -12.96565 -12.59157 -12.50289 -12.39919 -12.25323 -12.12826 -12.09771 -11.66778 -11.33834 -10.28588 -10.26657 -10.21825 -10.06269 -8.66185 -6.11314 0.59918 1.41235 1.47487 1.56187 1.83845 2.29643 2.37150 2.48675 2.94022 3.15164 3.30128 3.81908 3.93191 4.03112 4.05002 4.19311 4.29909 4.41549 4.53629 4.73641 4.78319 4.83951 5.04149 5.24847 5.25608 5.29853 5.67662 6.15269 6.27937 6.38145 6.80736 7.01143 7.27643 7.79777 8.49775 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.040310 B = 0.004274 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.458392 B = 6549.948123 C = 7054.270515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.511 5.511 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.518 3.482 13 O -0.568 6.568 14 N -0.691 5.691 15 C 0.115 3.885 16 C 0.058 3.942 17 O -0.384 6.384 18 C 0.006 3.994 19 C -0.186 4.186 20 C -0.193 4.193 21 H 0.289 0.711 22 H 0.401 0.599 23 H 0.416 0.584 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -17.496 0.337 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.116 0.884 9 N -0.144 5.144 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.300 3.700 13 O -0.447 6.447 14 N -0.344 5.344 15 C -0.007 4.007 16 C -0.018 4.018 17 O -0.303 6.303 18 C -0.051 4.051 19 C -0.223 4.223 20 C -0.230 4.230 21 H 0.099 0.901 22 H 0.235 0.765 23 H 0.252 0.748 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.016 -17.262 0.479 17.982 hybrid contribution 0.066 0.730 0.017 0.733 sum 5.083 -16.532 0.496 17.303 Atomic orbital electron populations 1.69553 1.07843 1.30842 1.45119 1.26559 0.96521 1.03496 0.94326 0.84680 0.77962 0.74927 0.79241 1.18834 1.19066 1.18838 1.19995 0.93703 0.83112 1.50861 0.88367 1.41654 1.10227 1.04781 1.57782 1.19648 0.87884 0.85324 0.89831 1.90543 1.13886 1.87314 1.59009 1.20051 0.86995 0.85993 0.76917 1.90674 1.14471 1.88344 1.51241 1.45618 1.11554 1.04531 1.72656 1.21704 0.94766 0.80718 1.03532 1.22906 0.94043 0.98050 0.86803 1.87888 1.52358 1.50719 1.39382 1.22981 0.92449 0.92963 0.96737 1.23443 1.01961 0.99700 0.97188 1.23406 0.94213 1.01145 1.04276 0.90063 0.76460 0.74785 0.91449 0.88284 0.88032 0.90648 0.84417 0.89612 0.85899 0.86138 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.75 13.03 21.76 0.28 -48.46 16 2 C 0.00 -0.25 5.51 85.14 0.47 0.22 16 3 Si 1.01 41.22 29.56 68.60 2.03 43.25 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.35 -19.90 9.67 84.35 0.82 -19.09 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.71 5.25 -308.88 -1.62 -30.33 16 10 C 0.39 20.56 7.82 87.08 0.68 21.24 16 11 O -0.62 -34.67 16.03 -3.71 -0.06 -34.72 16 12 C 0.52 23.34 7.87 87.08 0.69 24.03 16 13 O -0.57 -27.35 16.47 -3.53 -0.06 -27.41 16 14 N -0.69 -24.18 5.50 -465.00 -2.56 -26.73 16 15 C 0.12 2.97 6.06 86.38 0.52 3.50 16 16 C 0.06 1.07 5.94 71.98 0.43 1.49 16 17 O -0.38 -9.11 10.54 -148.98 -1.57 -10.68 16 18 C 0.01 0.11 6.44 30.59 0.20 0.30 16 19 C -0.19 -2.95 10.48 30.59 0.32 -2.63 16 20 C -0.19 -3.40 10.48 30.59 0.32 -3.07 16 21 H 0.29 14.36 8.30 -92.70 -0.77 13.59 16 22 H 0.40 22.72 7.35 -92.71 -0.68 22.04 16 23 H 0.42 14.23 7.93 -92.71 -0.74 13.50 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.14 1.56 7.93 -2.39 -0.02 1.54 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.66 291.74 0.63 -69.03 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -0.26 Total: 40.08 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 4.44 Total: 25.98 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.89 Total: -105.53 kcal Atomic # 8 Polarization: -71.13 SS G_CDS: -1.69 Total: -72.81 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -69.66 0.63 -69.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714992639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.863 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds