Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99955 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.09002 * 115.55023 * 29.41830 * 15 14 13 17 17 C 1.52995 * 117.49709 * 243.74511 * 15 14 13 18 18 C 1.53003 * 117.49452 * 175.08607 * 15 14 13 19 19 H 1.09000 * 117.49604 * 214.97723 * 18 15 14 20 20 C 1.50699 * 117.50113 * 0.02562 * 18 15 14 21 21 O 1.20829 * 119.99766 * 359.97438 * 20 18 15 22 22 O 1.34220 * 119.99958 * 179.97438 * 20 18 15 23 23 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 25 25 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 26 26 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 27 27 H 1.00895 * 111.00101 * 303.95589 * 13 12 10 28 28 H 1.08999 * 109.46830 * 300.00217 * 14 13 12 29 29 H 1.08991 * 109.46772 * 60.00099 * 14 13 12 30 30 H 1.09000 * 117.50031 * 0.02562 * 17 15 14 31 31 H 1.09005 * 117.49650 * 145.02374 * 17 15 14 32 32 H 0.96705 * 117.00359 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 1.4979 -7.2708 0.0316 15 6 2.5228 -8.4067 0.0378 16 1 3.4737 -8.1794 0.5197 17 6 2.5504 -9.3399 -1.1743 18 6 1.9920 -9.8364 0.1617 19 1 2.5940 -10.5497 0.7247 20 6 0.4998 -10.0179 0.2676 21 8 -0.2285 -9.0539 0.2534 22 8 -0.0202 -11.2504 0.3779 23 1 -0.4850 0.8401 -0.0004 24 1 0.3533 -2.3906 0.0068 25 1 0.6167 -4.9161 0.9093 26 1 0.6173 -4.9251 -0.8706 27 1 2.8331 -5.9162 -0.7568 28 1 0.8733 -7.3406 0.9221 29 1 0.8728 -7.3497 -0.8577 30 1 1.8387 -9.1443 -1.9764 31 1 3.5195 -9.7268 -1.4897 32 1 -0.9827 -11.3166 0.4434 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715303110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = -100.166204 kcal Electronic energy + Delta-G solvation = -16667.428359 eV Core-core repulsion = 13628.885901 eV Total energy + Delta-G solvation = -3038.542458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.75021 -38.31381 -37.65757 -36.07855 -34.64511 -33.67981 -31.16573 -28.18043 -25.72291 -24.93187 -23.26945 -21.44437 -20.42945 -19.12451 -18.42312 -17.82701 -16.98408 -15.93601 -15.70591 -15.36035 -15.09280 -14.48130 -14.15849 -13.81772 -13.42720 -13.30214 -12.89562 -12.58416 -12.01586 -11.79770 -11.65086 -11.47275 -11.37408 -11.03282 -10.74684 -10.60234 -10.30975 -10.18005 -10.15399 -9.47405 -8.39175 -7.96330 -7.89855 -6.37221 -3.77918 1.86783 2.72097 3.19567 3.29613 3.37130 3.44850 3.96864 4.04299 4.25469 4.49652 4.67381 4.82774 5.03315 5.20028 5.29845 5.31867 5.49182 5.55205 5.70241 5.86212 6.01988 6.08450 6.11963 6.31501 6.36623 7.32094 7.59639 7.67416 7.79280 8.11680 8.66601 9.22612 9.59881 10.11500 10.80739 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.059677 B = 0.003747 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.082541 B = 7469.883196 C = 7841.931457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.584 6.584 12 C 0.053 3.947 13 N -0.671 5.671 14 C 0.093 3.907 15 C -0.105 4.105 16 H 0.131 0.869 17 C -0.149 4.149 18 C -0.169 4.169 19 H 0.136 0.864 20 C 0.506 3.494 21 O -0.505 6.505 22 O -0.517 6.517 23 H 0.270 0.730 24 H 0.392 0.608 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.347 0.653 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 -19.766 -1.186 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.080 4.080 13 N -0.304 5.304 14 C -0.036 4.036 15 C -0.124 4.124 16 H 0.149 0.851 17 C -0.186 4.186 18 C -0.189 4.189 19 H 0.154 0.846 20 C 0.348 3.652 21 O -0.392 6.392 22 O -0.329 6.329 23 H 0.080 0.920 24 H 0.226 0.774 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.166 0.834 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.384 -19.280 -0.538 19.292 hybrid contribution -1.326 0.622 -0.782 1.661 sum -0.942 -18.659 -1.320 18.729 Atomic orbital electron populations 1.69631 1.05940 1.27981 1.50839 1.25266 0.95635 0.99713 0.97437 0.85796 0.79703 0.81158 0.77658 1.19218 1.20808 1.20774 1.19762 0.93399 0.82256 1.47346 0.87871 1.41878 1.09228 1.04605 1.64483 1.19846 0.88378 0.84760 0.84241 1.90511 1.13771 1.87126 1.55377 1.21626 0.94315 0.90750 1.01297 1.60078 1.19063 1.00145 1.51084 1.21650 0.93193 0.86838 1.01931 1.22599 1.01514 0.88099 1.00165 0.85072 1.23233 1.02824 1.02297 0.90273 1.21794 0.89388 1.01824 1.05896 0.84574 1.22455 0.90826 0.80122 0.71780 1.90769 1.62081 1.40773 1.45612 1.84503 1.30433 1.32817 1.85136 0.91971 0.77440 0.89590 0.93914 0.83399 0.89580 0.94767 0.88066 0.86956 0.73091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 10 C 0.44 10.88 7.82 -10.98 -0.09 10.80 16 11 O -0.58 -16.29 15.78 5.55 0.09 -16.20 16 12 C 0.05 1.01 6.17 -4.98 -0.03 0.98 16 13 N -0.67 -11.62 6.12 -115.06 -0.70 -12.32 16 14 C 0.09 1.32 4.23 -3.82 -0.02 1.30 16 15 C -0.11 -1.15 5.95 -90.62 -0.54 -1.68 16 16 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.15 -1.27 9.88 -26.69 -0.26 -1.53 16 18 C -0.17 -1.53 6.30 -91.73 -0.58 -2.11 16 19 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 20 C 0.51 5.26 8.09 36.01 0.29 5.55 16 21 O -0.50 -6.83 13.87 -18.75 -0.26 -7.09 16 22 O -0.52 -4.03 13.42 -39.23 -0.53 -4.56 16 23 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 24 H 0.39 9.88 7.90 -40.82 -0.32 9.56 16 25 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.35 6.02 8.43 -39.29 -0.33 5.69 16 28 H 0.09 1.33 6.93 -51.93 -0.36 0.97 16 29 H 0.03 0.50 7.29 -51.93 -0.38 0.12 16 30 H 0.10 0.90 8.03 -51.93 -0.42 0.48 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 1.54 9.10 45.56 0.41 1.95 16 LS Contribution 285.90 15.07 4.31 4.31 Total: -1.00 -33.91 285.90 -5.93 -39.84 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -3.02 Total: 13.79 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.46 Total: 5.12 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.04 Total: -51.59 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.70 Total: -27.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.91 -5.93 -39.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715303110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.323 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds