Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99955 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.09002 * 115.55023 * 29.41830 * 15 14 13 17 17 C 1.52995 * 117.49709 * 243.74511 * 15 14 13 18 18 C 1.53003 * 117.49452 * 175.08607 * 15 14 13 19 19 H 1.09000 * 117.49604 * 214.97723 * 18 15 14 20 20 C 1.50699 * 117.50113 * 0.02562 * 18 15 14 21 21 O 1.20829 * 119.99766 * 359.97438 * 20 18 15 22 22 O 1.34220 * 119.99958 * 179.97438 * 20 18 15 23 23 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 25 25 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 26 26 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 27 27 H 1.00895 * 111.00101 * 303.95589 * 13 12 10 28 28 H 1.08999 * 109.46830 * 300.00217 * 14 13 12 29 29 H 1.08991 * 109.46772 * 60.00099 * 14 13 12 30 30 H 1.09000 * 117.50031 * 0.02562 * 17 15 14 31 31 H 1.09005 * 117.49650 * 145.02374 * 17 15 14 32 32 H 0.96705 * 117.00359 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 1.4979 -7.2708 0.0316 15 6 2.5228 -8.4067 0.0378 16 1 3.4737 -8.1794 0.5197 17 6 2.5504 -9.3399 -1.1743 18 6 1.9920 -9.8364 0.1617 19 1 2.5940 -10.5497 0.7247 20 6 0.4998 -10.0179 0.2676 21 8 -0.2285 -9.0539 0.2534 22 8 -0.0202 -11.2504 0.3779 23 1 -0.4850 0.8401 -0.0004 24 1 0.3533 -2.3906 0.0068 25 1 0.6167 -4.9161 0.9093 26 1 0.6173 -4.9251 -0.8706 27 1 2.8331 -5.9162 -0.7568 28 1 0.8733 -7.3406 0.9221 29 1 0.8728 -7.3497 -0.8577 30 1 1.8387 -9.1443 -1.9764 31 1 3.5195 -9.7268 -1.4897 32 1 -0.9827 -11.3166 0.4434 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715303110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = -127.442302 kcal Electronic energy + Delta-G solvation = -16668.611140 eV Core-core repulsion = 13628.885901 eV Total energy + Delta-G solvation = -3039.725239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54756 -40.16612 -38.59298 -36.90374 -36.22057 -35.51795 -33.27143 -29.62626 -27.09843 -26.17464 -24.75983 -22.24807 -21.43852 -20.86982 -19.90144 -19.19331 -18.16191 -17.32910 -16.76249 -16.70901 -16.44209 -16.13391 -15.69375 -15.28236 -14.74775 -14.66747 -14.28155 -13.55977 -13.52853 -13.33740 -13.18531 -12.84435 -12.56882 -12.42093 -12.34069 -12.10368 -11.56845 -11.52109 -11.42375 -11.01550 -10.36855 -10.02876 -9.35592 -8.47226 -5.96594 1.08660 1.37017 1.42081 1.57088 2.02653 2.06718 2.28890 2.66047 2.91776 3.19576 3.44000 3.77313 3.86044 3.95283 4.29920 4.34324 4.42807 4.43765 4.52691 4.70825 4.81712 4.90130 5.00212 5.21565 5.40555 5.63211 5.87676 6.08365 6.42776 6.58501 7.01727 7.11083 7.54045 8.08779 8.70611 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.059677 B = 0.003747 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.082541 B = 7469.883196 C = 7841.931457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.997 3.003 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.066 3.934 13 N -0.680 5.680 14 C 0.102 3.898 15 C -0.127 4.127 16 H 0.134 0.866 17 C -0.131 4.131 18 C -0.161 4.161 19 H 0.163 0.837 20 C 0.506 3.494 21 O -0.544 6.544 22 O -0.509 6.509 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.346 0.654 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 -20.757 -1.419 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.067 4.067 13 N -0.313 5.313 14 C -0.026 4.026 15 C -0.145 4.145 16 H 0.151 0.849 17 C -0.168 4.168 18 C -0.180 4.180 19 H 0.181 0.819 20 C 0.350 3.650 21 O -0.434 6.434 22 O -0.323 6.323 23 H 0.087 0.913 24 H 0.230 0.770 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 0.473 -20.319 -0.769 20.339 hybrid contribution -1.419 0.835 -0.702 1.789 sum -0.946 -19.484 -1.471 19.562 Atomic orbital electron populations 1.69695 1.06952 1.29298 1.50333 1.26102 0.96571 1.02571 0.96167 0.84821 0.78044 0.76812 0.78342 1.19627 1.19490 1.19602 1.19747 0.92785 0.83943 1.49931 0.90130 1.41948 1.09333 1.04760 1.64980 1.20770 0.88244 0.86017 0.82306 1.90476 1.15622 1.87926 1.56628 1.21477 0.94100 0.88461 1.02636 1.60091 1.19109 1.00876 1.51203 1.21554 0.93761 0.86386 1.00915 1.22440 1.00909 0.88053 1.03137 0.84867 1.23342 1.03900 1.00136 0.89438 1.21937 0.88924 1.00640 1.06521 0.81916 1.22738 0.91321 0.80173 0.70762 1.90761 1.63073 1.42053 1.47550 1.84464 1.32177 1.31293 1.84369 0.91267 0.77049 0.88491 0.92090 0.83522 0.91124 0.95197 0.88526 0.84241 0.71063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.93 13.05 21.66 0.28 -50.65 16 2 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 3 Si 1.00 43.61 29.55 68.60 2.03 45.63 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 8 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.57 -30.67 5.29 -306.98 -1.62 -32.29 16 10 C 0.44 22.00 7.82 87.66 0.69 22.68 16 11 O -0.62 -35.43 15.78 -3.07 -0.05 -35.48 16 12 C 0.07 2.51 6.17 85.56 0.53 3.04 16 13 N -0.68 -23.45 6.12 -517.95 -3.17 -26.63 16 14 C 0.10 2.86 4.23 86.30 0.36 3.22 16 15 C -0.13 -2.58 5.95 -10.79 -0.06 -2.65 16 16 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.13 -1.90 9.88 30.62 0.30 -1.60 16 18 C -0.16 -2.52 6.30 -11.51 -0.07 -2.59 16 19 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 20 C 0.51 9.70 8.09 71.24 0.58 10.28 16 21 O -0.54 -14.39 13.87 21.96 0.30 -14.09 16 22 O -0.51 -6.82 13.42 -51.32 -0.69 -7.51 16 23 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.40 20.24 7.90 -92.71 -0.73 19.51 16 25 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.35 12.00 8.43 -89.70 -0.76 11.24 16 28 H 0.07 2.19 6.93 -2.39 -0.02 2.18 16 29 H 0.03 0.86 7.29 -2.39 -0.02 0.84 16 30 H 0.10 1.52 8.03 -2.39 -0.02 1.50 16 31 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.43 2.37 9.10 -74.05 -0.67 1.69 16 Total: -1.00 -73.18 285.90 -0.30 -73.49 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.98 Total: 34.15 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 3.60 Total: 13.36 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.51 Total: -109.56 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -0.43 Total: -57.07 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.18 -0.30 -73.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715303110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.957 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds