Wall clock time and date at job start Mon Mar 30 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47837 * 2 1 4 4 H 1.09002 * 109.47249 * 306.29918 * 3 2 1 5 5 C 1.50698 * 109.47541 * 186.29266 * 3 2 1 6 6 H 1.07992 * 120.00055 * 240.00303 * 5 3 2 7 7 C 1.37878 * 119.99792 * 60.00233 * 5 3 2 8 8 N 1.31512 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99912 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47269 * 60.00224 * 9 7 5 11 11 H 1.48500 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47572 * 300.00117 * 9 7 5 13 13 C 1.53011 * 109.46795 * 66.29231 * 3 2 1 14 14 C 1.50701 * 109.89346 * 53.20062 * 13 3 2 15 15 O 1.20822 * 120.00328 * 25.22796 * 14 13 3 16 16 O 1.34228 * 119.99536 * 205.23184 * 14 13 3 17 17 C 1.54385 * 109.82799 * 174.12983 * 13 3 2 18 18 C 1.55305 * 102.43254 * 140.97167 * 17 13 3 19 19 H 1.08999 * 111.12239 * 83.68971 * 18 17 13 20 20 C 1.52995 * 111.12371 * 207.80138 * 18 17 13 21 21 C 1.54949 * 100.94444 * 325.76560 * 18 17 13 22 22 O 1.43644 * 105.13605 * 36.44508 * 21 18 17 23 23 H 1.08989 * 109.47253 * 172.51239 * 1 2 3 24 24 H 1.09003 * 109.47031 * 292.51740 * 1 2 3 25 25 H 1.09003 * 109.46665 * 52.51542 * 1 2 3 26 26 H 1.09000 * 109.47360 * 239.99607 * 2 1 3 27 27 H 1.09002 * 109.47073 * 120.00531 * 2 1 3 28 28 H 0.96997 * 120.00024 * 180.02562 * 8 7 5 29 29 H 0.96706 * 116.99864 * 180.02562 * 16 14 13 30 30 H 1.09002 * 110.84470 * 22.68362 * 17 13 3 31 31 H 1.09001 * 110.84612 * 259.26579 * 17 13 3 32 32 H 1.09003 * 109.46802 * 60.00423 * 20 18 17 33 33 H 1.08995 * 109.47416 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.47527 * 300.00266 * 20 18 17 35 35 H 1.09000 * 110.30422 * 155.35754 * 21 18 17 36 36 H 1.08998 * 110.30613 * 277.53165 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.5878 1.9878 -0.8282 5 6 3.5391 1.4452 -0.1557 6 1 4.1608 1.8838 0.6106 7 6 4.1167 0.8876 -1.2767 8 7 3.3596 0.3530 -2.2097 9 14 5.9746 0.8917 -1.4701 10 1 6.5914 0.1490 -0.3416 11 1 6.3403 0.2368 -2.7517 12 1 6.4693 2.2918 -1.4703 13 6 1.6634 2.1166 1.3209 14 6 2.1425 1.2795 2.4788 15 8 3.0793 0.5300 2.3357 16 8 1.5283 1.3665 3.6692 17 6 2.2993 3.5216 1.3918 18 6 1.1767 4.3636 2.0570 19 1 1.2054 4.2688 3.1425 20 6 1.2631 5.8310 1.6327 21 6 -0.0868 3.6851 1.4703 22 8 0.2379 2.2878 1.3965 23 1 -0.3633 -1.0188 -0.1339 24 1 -0.3633 0.3936 0.9493 25 1 -0.3633 0.6254 -0.8155 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.7660 -0.0396 -2.9981 29 1 1.8716 0.8104 4.3820 30 1 2.5251 3.8960 0.3933 31 1 3.1956 3.5108 2.0121 32 1 1.1575 5.9030 0.5502 33 1 0.4651 6.3961 2.1143 34 1 2.2284 6.2395 1.9316 35 1 -0.9405 3.8408 2.1299 36 1 -0.2994 4.0771 0.4758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718402413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:04 Heat of formation + Delta-G solvation = -145.588632 kcal Electronic energy + Delta-G solvation = -19277.166426 eV Core-core repulsion = 16340.194647 eV Total energy + Delta-G solvation = -2936.971779 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30416 -38.28099 -35.68636 -34.32870 -33.19016 -31.42980 -29.94013 -26.49354 -26.06137 -23.84154 -22.89319 -20.94247 -20.11227 -18.76992 -17.65448 -16.84148 -15.75696 -15.65272 -14.63966 -14.52772 -14.47147 -13.68912 -13.24375 -13.01329 -12.70268 -12.56788 -12.34840 -11.78881 -11.48000 -11.34513 -11.12933 -10.94395 -10.90286 -10.79221 -10.52633 -10.43911 -10.35153 -10.05173 -9.90267 -9.41322 -9.29554 -8.82973 -8.60006 -8.19706 -5.91756 -3.95090 2.95993 3.37137 3.41559 3.46254 3.76258 4.33361 4.54483 4.86073 5.08004 5.20936 5.38979 5.59134 5.64242 5.73461 5.85464 5.91699 6.06495 6.19830 6.28221 6.36824 6.47075 6.51633 6.59960 6.68403 6.79490 7.14310 7.20466 7.29502 7.38725 7.60928 7.79497 7.98406 8.17028 8.45865 8.72326 9.01834 9.66084 11.14306 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.010075 C = 0.009207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.656505 B = 2778.522918 C = 3040.350644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.067 3.933 4 H 0.046 0.954 5 C -0.492 4.492 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.133 3.867 14 C 0.474 3.526 15 O -0.475 6.475 16 O -0.524 6.524 17 C -0.119 4.119 18 C -0.134 4.134 19 H 0.083 0.917 20 C -0.138 4.138 21 C 0.053 3.947 22 O -0.357 6.357 23 H 0.024 0.976 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.259 0.741 29 H 0.391 0.609 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 7.259 7.917 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.048 3.952 4 H 0.064 0.936 5 C -0.530 4.530 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.093 3.907 14 C 0.314 3.686 15 O -0.359 6.359 16 O -0.335 6.335 17 C -0.156 4.156 18 C -0.153 4.153 19 H 0.101 0.899 20 C -0.195 4.195 21 C -0.023 4.023 22 O -0.277 6.277 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.247 0.753 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.250 7.031 7.356 11.450 hybrid contribution 1.410 -0.375 0.417 1.517 sum -3.840 6.656 7.773 10.930 Atomic orbital electron populations 1.21911 0.98888 0.98387 1.00982 1.21712 0.91971 0.99621 1.03033 1.18990 0.96390 0.92761 0.87047 0.93646 1.20935 0.90248 1.37723 1.04116 0.92468 1.24851 0.97757 0.95410 0.95896 1.69873 1.34570 1.39272 1.09395 0.86663 0.86130 0.78088 0.77142 1.20315 1.21459 1.20436 1.22602 0.80597 0.94661 0.92830 1.24028 0.80577 0.81448 0.82571 1.90754 1.27144 1.35251 1.82777 1.84686 1.61308 1.65433 1.22092 1.23066 0.97548 0.91944 1.03084 1.22939 0.95848 0.95725 1.00776 0.89893 1.21644 1.01615 0.94546 1.01706 1.23394 0.96729 0.82509 0.99688 1.88660 1.21424 1.22993 1.94597 0.95683 0.92920 0.93928 0.88664 0.94331 0.93059 0.75272 0.88152 0.90753 0.92111 0.92725 0.92406 0.90543 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.06 37.16 0.34 -2.82 16 2 C -0.13 -3.17 4.97 -26.73 -0.13 -3.30 16 3 C 0.07 1.66 1.34 -91.77 -0.12 1.53 16 4 H 0.05 1.21 8.12 -51.93 -0.42 0.79 16 5 C -0.49 -13.33 6.30 -34.44 -0.22 -13.55 16 6 H 0.06 1.56 6.70 -52.49 -0.35 1.21 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.57 11.29 55.43 0.63 -24.94 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.13 2.79 0.61 -91.04 -0.06 2.74 16 14 C 0.47 10.00 6.12 36.01 0.22 10.22 16 15 O -0.48 -11.56 13.86 -18.75 -0.26 -11.82 16 16 O -0.52 -8.90 13.18 -44.34 -0.58 -9.49 16 17 C -0.12 -2.15 4.39 -24.78 -0.11 -2.25 16 18 C -0.13 -1.92 3.69 -88.37 -0.33 -2.25 16 19 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.14 -1.58 9.32 37.16 0.35 -1.24 16 21 C 0.05 0.81 7.26 38.19 0.28 1.09 16 22 O -0.36 -6.94 7.47 -48.77 -0.36 -7.30 16 23 H 0.02 0.50 8.14 -51.94 -0.42 0.07 16 24 H 0.05 1.12 5.94 -51.93 -0.31 0.81 16 25 H 0.04 0.92 8.12 -51.93 -0.42 0.49 16 26 H 0.10 2.67 5.93 -51.93 -0.31 2.37 16 27 H 0.04 1.01 5.79 -51.93 -0.30 0.70 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 4.79 9.10 45.56 0.41 5.20 16 30 H 0.10 1.89 7.56 -51.93 -0.39 1.49 16 31 H 0.07 1.34 7.78 -51.93 -0.40 0.93 16 32 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.86 7.97 -51.93 -0.41 0.45 16 LS Contribution 285.10 15.07 4.30 4.30 Total: -1.00 -31.01 285.10 -5.76 -36.77 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.57 Total: 3.92 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.12 Total: -8.22 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.63 Total: -24.94 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.21 Total: -28.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.01 -5.76 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718402413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.815 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds