Wall clock time and date at job start Mon Mar 30 2020 04:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47837 * 2 1 4 4 H 1.09002 * 109.47249 * 306.29918 * 3 2 1 5 5 C 1.50698 * 109.47541 * 186.29266 * 3 2 1 6 6 H 1.07992 * 120.00055 * 240.00303 * 5 3 2 7 7 C 1.37878 * 119.99792 * 60.00233 * 5 3 2 8 8 N 1.31512 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99912 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47269 * 60.00224 * 9 7 5 11 11 H 1.48500 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47572 * 300.00117 * 9 7 5 13 13 C 1.53011 * 109.46795 * 66.29231 * 3 2 1 14 14 C 1.50701 * 109.89346 * 53.20062 * 13 3 2 15 15 O 1.20822 * 120.00328 * 25.22796 * 14 13 3 16 16 O 1.34228 * 119.99536 * 205.23184 * 14 13 3 17 17 C 1.54385 * 109.82799 * 174.12983 * 13 3 2 18 18 C 1.55305 * 102.43254 * 140.97167 * 17 13 3 19 19 H 1.08999 * 111.12239 * 83.68971 * 18 17 13 20 20 C 1.52995 * 111.12371 * 207.80138 * 18 17 13 21 21 C 1.54949 * 100.94444 * 325.76560 * 18 17 13 22 22 O 1.43644 * 105.13605 * 36.44508 * 21 18 17 23 23 H 1.08989 * 109.47253 * 172.51239 * 1 2 3 24 24 H 1.09003 * 109.47031 * 292.51740 * 1 2 3 25 25 H 1.09003 * 109.46665 * 52.51542 * 1 2 3 26 26 H 1.09000 * 109.47360 * 239.99607 * 2 1 3 27 27 H 1.09002 * 109.47073 * 120.00531 * 2 1 3 28 28 H 0.96997 * 120.00024 * 180.02562 * 8 7 5 29 29 H 0.96706 * 116.99864 * 180.02562 * 16 14 13 30 30 H 1.09002 * 110.84470 * 22.68362 * 17 13 3 31 31 H 1.09001 * 110.84612 * 259.26579 * 17 13 3 32 32 H 1.09003 * 109.46802 * 60.00423 * 20 18 17 33 33 H 1.08995 * 109.47416 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.47527 * 300.00266 * 20 18 17 35 35 H 1.09000 * 110.30422 * 155.35754 * 21 18 17 36 36 H 1.08998 * 110.30613 * 277.53165 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.5878 1.9878 -0.8282 5 6 3.5391 1.4452 -0.1557 6 1 4.1608 1.8838 0.6106 7 6 4.1167 0.8876 -1.2767 8 7 3.3596 0.3530 -2.2097 9 14 5.9746 0.8917 -1.4701 10 1 6.5914 0.1490 -0.3416 11 1 6.3403 0.2368 -2.7517 12 1 6.4693 2.2918 -1.4703 13 6 1.6634 2.1166 1.3209 14 6 2.1425 1.2795 2.4788 15 8 3.0793 0.5300 2.3357 16 8 1.5283 1.3665 3.6692 17 6 2.2993 3.5216 1.3918 18 6 1.1767 4.3636 2.0570 19 1 1.2054 4.2688 3.1425 20 6 1.2631 5.8310 1.6327 21 6 -0.0868 3.6851 1.4703 22 8 0.2379 2.2878 1.3965 23 1 -0.3633 -1.0188 -0.1339 24 1 -0.3633 0.3936 0.9493 25 1 -0.3633 0.6254 -0.8155 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.7660 -0.0396 -2.9981 29 1 1.8716 0.8104 4.3820 30 1 2.5251 3.8960 0.3933 31 1 3.1956 3.5108 2.0121 32 1 1.1575 5.9030 0.5502 33 1 0.4651 6.3961 2.1143 34 1 2.2284 6.2395 1.9316 35 1 -0.9405 3.8408 2.1299 36 1 -0.2994 4.0771 0.4758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718402413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:03 Heat of formation + Delta-G solvation = -165.609348 kcal Electronic energy + Delta-G solvation = -19278.034590 eV Core-core repulsion = 16340.194647 eV Total energy + Delta-G solvation = -2937.839943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88621 -39.77656 -37.31187 -36.13150 -34.52851 -33.42534 -31.55551 -28.35438 -27.20432 -25.46857 -24.72954 -22.64069 -21.45342 -20.48193 -19.26674 -18.54620 -17.51721 -17.26423 -16.55642 -16.04397 -15.83175 -15.31339 -14.77756 -14.53546 -14.42389 -13.93954 -13.74044 -13.29677 -13.16985 -12.99035 -12.93559 -12.70839 -12.60034 -12.34298 -12.26639 -12.01978 -11.88559 -11.54861 -11.41188 -11.37686 -11.06317 -10.72593 -10.44534 -10.15685 -8.03455 -6.11542 1.31875 1.40062 1.43637 1.49770 2.26232 2.45390 2.99167 3.24537 3.59753 3.81590 3.92481 4.18901 4.41345 4.58143 4.63135 4.68019 4.76109 4.78484 4.88224 4.92521 4.98091 5.07772 5.10778 5.23792 5.29216 5.43824 5.48252 5.53419 5.68838 5.70238 5.93148 6.01252 6.15839 6.40737 6.90468 7.21238 7.51482 9.01609 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.010075 C = 0.009207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.656505 B = 2778.522918 C = 3040.350644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.067 3.933 4 H 0.020 0.980 5 C -0.494 4.494 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.284 1.284 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.132 3.868 14 C 0.480 3.520 15 O -0.517 6.517 16 O -0.508 6.508 17 C -0.120 4.120 18 C -0.119 4.119 19 H 0.094 0.906 20 C -0.134 4.134 21 C 0.044 3.956 22 O -0.371 6.371 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.258 0.742 29 H 0.415 0.585 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 8.748 9.377 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.048 3.952 4 H 0.038 0.962 5 C -0.532 4.532 6 H 0.069 0.931 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.772 3.228 10 H -0.210 1.210 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.092 3.908 14 C 0.322 3.678 15 O -0.405 6.405 16 O -0.321 6.321 17 C -0.158 4.158 18 C -0.137 4.137 19 H 0.112 0.888 20 C -0.191 4.191 21 C -0.032 4.032 22 O -0.291 6.291 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.275 0.725 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.976 8.542 8.846 13.673 hybrid contribution 1.559 -0.834 0.036 1.768 sum -4.418 7.708 8.882 12.563 Atomic orbital electron populations 1.21752 0.96219 0.99381 1.01434 1.21572 0.94316 0.99478 1.00582 1.18807 0.95033 0.92545 0.88801 0.96249 1.21170 0.91653 1.36852 1.03572 0.93072 1.25570 1.01578 0.95552 0.95974 1.70002 1.35929 1.40196 1.09767 0.85802 0.81663 0.78583 0.76739 1.21007 1.21049 1.18988 1.22214 0.81997 0.95646 0.90985 1.23934 0.79859 0.80465 0.83573 1.90740 1.29030 1.37009 1.83698 1.84592 1.60322 1.65629 1.21525 1.23041 0.98765 0.91171 1.02809 1.22902 0.93194 0.96684 1.00925 0.88786 1.21641 1.03055 0.92704 1.01730 1.23718 0.98118 0.80462 1.00896 1.88605 1.20040 1.25809 1.94617 0.94228 0.91892 0.94111 0.91984 0.95735 0.93275 0.72502 0.89591 0.91059 0.92508 0.90131 0.91763 0.87534 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 9.06 71.98 0.65 -5.02 16 2 C -0.12 -6.27 4.97 30.59 0.15 -6.12 16 3 C 0.07 3.39 1.34 -11.54 -0.02 3.37 16 4 H 0.02 1.08 8.12 -2.39 -0.02 1.06 16 5 C -0.49 -27.37 6.30 25.60 0.16 -27.20 16 6 H 0.05 2.84 6.70 -2.91 -0.02 2.82 16 7 C 0.01 0.61 5.29 84.66 0.45 1.06 16 8 N -0.92 -54.16 11.29 21.45 0.24 -53.92 16 9 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 10 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.13 5.47 0.61 -11.07 -0.01 5.46 16 14 C 0.48 19.85 6.12 71.24 0.44 20.29 16 15 O -0.52 -25.28 13.86 21.98 0.30 -24.98 16 16 O -0.51 -16.01 13.18 -46.53 -0.61 -16.62 16 17 C -0.12 -4.23 4.39 31.86 0.14 -4.09 16 18 C -0.12 -3.05 3.69 -9.34 -0.03 -3.09 16 19 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 20 C -0.13 -2.65 9.32 71.98 0.67 -1.98 16 21 C 0.04 1.21 7.26 72.65 0.53 1.74 16 22 O -0.37 -13.78 7.47 -136.04 -1.02 -14.79 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.59 5.94 -2.39 -0.01 2.58 16 25 H 0.04 1.74 8.12 -2.39 -0.02 1.72 16 26 H 0.06 3.60 5.93 -2.39 -0.01 3.59 16 27 H 0.02 1.30 5.79 -2.39 -0.01 1.28 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 29 H 0.42 9.03 9.10 -74.05 -0.67 8.35 16 30 H 0.09 3.24 7.56 -2.39 -0.02 3.22 16 31 H 0.07 2.51 7.78 -2.39 -0.02 2.49 16 32 H 0.06 1.17 8.06 -2.39 -0.02 1.15 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.69 7.97 -2.39 -0.02 1.67 16 Total: -1.00 -67.83 285.10 4.48 -63.35 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.40 Total: 15.15 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 3.13 Total: -15.58 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.24 Total: -53.92 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -1.32 Total: -56.39 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -67.83 4.48 -63.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718402413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.256 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds