Wall clock time and date at job start Mon Mar 30 2020 04:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47017 * 173.48053 * 3 2 1 5 5 C 1.50698 * 109.47054 * 53.47841 * 3 2 1 6 6 H 1.07997 * 119.99595 * 234.52852 * 5 3 2 7 7 C 1.37874 * 120.00302 * 54.53627 * 5 3 2 8 8 N 1.31517 * 119.99754 * 17.26834 * 7 5 3 9 9 Si 1.86792 * 120.00141 * 197.27127 * 7 5 3 10 10 H 1.48497 * 109.47381 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47053 * 239.99622 * 9 7 5 12 12 H 1.48501 * 109.47310 * 119.99853 * 9 7 5 13 13 C 1.53001 * 109.46833 * 293.47717 * 3 2 1 14 14 C 1.50697 * 109.87000 * 295.00054 * 13 3 2 15 15 O 1.20830 * 119.99992 * 332.34383 * 14 13 3 16 16 O 1.34234 * 120.00108 * 152.35188 * 14 13 3 17 17 C 1.54100 * 109.87740 * 173.99290 * 13 3 2 18 18 C 1.54805 * 104.18820 * 242.60542 * 17 13 3 19 19 H 1.08997 * 110.91027 * 262.64874 * 18 17 13 20 20 C 1.53003 * 110.90774 * 139.07530 * 18 17 13 21 21 C 1.54996 * 102.09427 * 20.88109 * 18 17 13 22 22 O 1.43740 * 109.87837 * 56.15889 * 13 3 2 23 23 H 1.08996 * 109.46977 * 197.30469 * 1 2 3 24 24 H 1.09001 * 109.46737 * 317.30536 * 1 2 3 25 25 H 1.08997 * 109.46813 * 77.30746 * 1 2 3 26 26 H 1.09004 * 109.47193 * 239.99501 * 2 1 3 27 27 H 1.08997 * 109.47083 * 119.99801 * 2 1 3 28 28 H 0.97003 * 119.99969 * 4.64900 * 8 7 5 29 29 H 0.96698 * 117.00004 * 179.97438 * 16 14 13 30 30 H 1.09001 * 110.48752 * 1.28507 * 17 13 3 31 31 H 1.09005 * 110.48815 * 123.79376 * 17 13 3 32 32 H 1.09003 * 109.46765 * 60.00501 * 20 18 17 33 33 H 1.09000 * 109.47124 * 179.97438 * 20 18 17 34 34 H 1.08995 * 109.47503 * 300.00618 * 20 18 17 35 35 H 1.08996 * 110.61652 * 81.47483 * 21 18 17 36 36 H 1.08993 * 110.62144 * 204.31899 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1238 1.4447 0.1167 5 6 1.4103 2.1979 1.1418 6 1 0.8796 3.1192 0.9522 7 6 1.5117 1.7131 2.4285 8 7 2.4178 0.8054 2.7196 9 14 0.3622 2.3452 3.7582 10 1 -0.5585 3.3553 3.1774 11 1 1.1585 2.9691 4.8454 12 1 -0.4270 1.2143 4.3090 13 6 1.6682 2.1148 -1.3231 14 6 2.3912 1.4413 -2.4609 15 8 3.4523 0.8975 -2.2648 16 8 1.8566 1.4455 -3.6921 17 6 2.0431 3.6088 -1.2752 18 6 0.6889 4.3446 -1.4209 19 1 0.5205 4.6487 -2.4540 20 6 0.6187 5.5501 -0.4813 21 6 -0.3227 3.2508 -0.9936 22 8 0.2477 2.0370 -1.5286 23 1 -0.3633 -0.9811 0.3057 24 1 -0.3633 0.7553 0.6969 25 1 -0.3633 0.2258 -1.0025 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0584 0.5263 2.0467 29 1 2.3574 1.0010 -4.3897 30 1 2.5102 3.8545 -0.3215 31 1 2.7080 3.8620 -2.1011 32 1 1.4229 6.2455 -0.7218 33 1 -0.3421 6.0503 -0.6031 34 1 0.7256 5.2138 0.5499 35 1 -0.3923 3.1958 0.0928 36 1 -1.3026 3.4424 -1.4306 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718402468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:12 Heat of formation + Delta-G solvation = -141.728894 kcal Electronic energy + Delta-G solvation = -19578.267122 eV Core-core repulsion = 16641.462714 eV Total energy + Delta-G solvation = -2936.804408 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51258 -38.63848 -35.81789 -34.71038 -33.12130 -31.19876 -29.89910 -26.20531 -25.96582 -23.97678 -23.27360 -21.03309 -19.93080 -19.00039 -17.87951 -16.95933 -16.36996 -15.70811 -14.66897 -14.52041 -13.93510 -13.77853 -13.55438 -12.95240 -12.63309 -12.50886 -12.42714 -11.99828 -11.49937 -11.42041 -11.17421 -11.08083 -10.84647 -10.75563 -10.50476 -10.30228 -10.17870 -10.03918 -9.86902 -9.69659 -9.44189 -8.63222 -8.48378 -8.07314 -6.33617 -4.02689 2.62525 3.40541 3.44627 3.51271 3.55338 4.49366 4.52669 5.01058 5.19242 5.28876 5.32703 5.58184 5.77939 5.82448 5.97332 6.06254 6.18254 6.32148 6.35478 6.45119 6.49123 6.51670 6.62316 6.68389 6.77773 6.85020 7.14651 7.25450 7.33084 7.54335 7.64405 7.74718 8.16362 8.38157 8.43470 8.83085 9.62352 10.99099 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.012155 C = 0.009571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.124879 B = 2302.960002 C = 2924.826889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.040 3.960 4 H 0.032 0.968 5 C -0.601 4.601 6 H 0.068 0.932 7 C 0.034 3.966 8 N -0.899 5.899 9 Si 1.053 2.947 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.137 3.863 14 C 0.487 3.513 15 O -0.512 6.512 16 O -0.510 6.510 17 C -0.127 4.127 18 C -0.120 4.120 19 H 0.073 0.927 20 C -0.141 4.141 21 C 0.043 3.957 22 O -0.344 6.344 23 H 0.014 0.986 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.275 0.725 29 H 0.394 0.606 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 6.067 -8.235 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.050 0.950 5 C -0.638 4.638 6 H 0.086 0.914 7 C -0.173 4.173 8 N -0.534 5.534 9 Si 0.882 3.118 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.096 3.904 14 C 0.330 3.670 15 O -0.400 6.400 16 O -0.321 6.321 17 C -0.164 4.164 18 C -0.139 4.139 19 H 0.091 0.909 20 C -0.198 4.198 21 C -0.033 4.033 22 O -0.263 6.263 23 H 0.033 0.967 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.251 0.749 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.427 5.744 -6.371 9.653 hybrid contribution 0.973 -0.089 -2.106 2.322 sum -3.454 5.655 -8.477 10.759 Atomic orbital electron populations 1.21802 0.96236 0.98961 1.01782 1.21456 0.96408 0.98204 0.99068 1.19239 0.96945 0.92751 0.88940 0.94965 1.21925 1.39016 1.10693 0.92176 0.91379 1.25552 0.97827 0.95374 0.98506 1.70679 1.14717 1.30267 1.37720 0.83806 0.76062 0.76074 0.75846 1.21276 1.21696 1.21187 1.22190 0.82388 0.95200 0.90637 1.24081 0.83884 0.76221 0.82841 1.90681 1.23320 1.41850 1.84099 1.84714 1.54365 1.73152 1.19822 1.22958 0.97696 0.91996 1.03773 1.22613 0.95443 0.96240 0.99555 0.90862 1.21718 1.00962 0.96746 1.00417 1.23987 0.95399 0.82555 1.01389 1.88898 1.16973 1.39192 1.81220 0.96728 0.90929 0.92935 0.96430 0.91772 0.91382 0.74904 0.87611 0.92477 0.92891 0.92924 0.91205 0.88622 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.63 37.16 0.32 -2.65 16 2 C -0.11 -2.77 5.15 -26.73 -0.14 -2.91 16 3 C 0.04 0.97 0.95 -91.77 -0.09 0.88 16 4 H 0.03 0.88 7.26 -51.93 -0.38 0.50 16 5 C -0.60 -14.84 4.85 -34.44 -0.17 -15.01 16 6 H 0.07 1.59 3.23 -52.49 -0.17 1.42 16 7 C 0.03 0.89 4.85 -17.82 -0.09 0.80 16 8 N -0.90 -25.74 12.64 55.43 0.70 -25.04 16 9 Si 1.05 23.65 29.94 -169.99 -5.09 18.57 16 10 H -0.29 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.86 0.76 -91.20 -0.07 2.79 16 14 C 0.49 9.90 6.09 36.00 0.22 10.12 16 15 O -0.51 -11.54 16.33 -18.75 -0.31 -11.85 16 16 O -0.51 -8.46 13.15 -44.51 -0.59 -9.04 16 17 C -0.13 -2.32 5.24 -25.21 -0.13 -2.45 16 18 C -0.12 -1.89 3.56 -88.61 -0.32 -2.20 16 19 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.14 -1.95 9.16 37.16 0.34 -1.61 16 21 C 0.04 0.75 6.49 38.21 0.25 1.00 16 22 O -0.34 -6.98 6.96 -49.41 -0.34 -7.32 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.07 1.72 6.31 -51.93 -0.33 1.39 16 25 H 0.05 1.14 6.04 -51.93 -0.31 0.83 16 26 H 0.02 0.42 6.87 -51.93 -0.36 0.06 16 27 H 0.06 1.71 6.11 -51.93 -0.32 1.39 16 28 H 0.27 8.02 6.43 -40.82 -0.26 7.76 16 29 H 0.39 4.46 9.10 45.56 0.41 4.88 16 30 H 0.11 2.09 6.55 -51.93 -0.34 1.75 16 31 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 35 H 0.10 1.85 5.14 -51.93 -0.27 1.59 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 274.64 15.07 4.14 4.14 Total: -1.00 -29.70 274.64 -5.35 -35.05 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.00 Total: 6.75 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 0.13 Total: -11.25 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.70 Total: -25.04 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.24 Total: -28.21 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.09 Total: 18.57 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.70 -5.35 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718402468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.679 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds