Wall clock time and date at job start Mon Mar 30 2020 04:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47017 * 173.48053 * 3 2 1 5 5 C 1.50698 * 109.47054 * 53.47841 * 3 2 1 6 6 H 1.07997 * 119.99595 * 234.52852 * 5 3 2 7 7 C 1.37874 * 120.00302 * 54.53627 * 5 3 2 8 8 N 1.31517 * 119.99754 * 17.26834 * 7 5 3 9 9 Si 1.86792 * 120.00141 * 197.27127 * 7 5 3 10 10 H 1.48497 * 109.47381 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47053 * 239.99622 * 9 7 5 12 12 H 1.48501 * 109.47310 * 119.99853 * 9 7 5 13 13 C 1.53001 * 109.46833 * 293.47717 * 3 2 1 14 14 C 1.50697 * 109.87000 * 295.00054 * 13 3 2 15 15 O 1.20830 * 119.99992 * 332.34383 * 14 13 3 16 16 O 1.34234 * 120.00108 * 152.35188 * 14 13 3 17 17 C 1.54100 * 109.87740 * 173.99290 * 13 3 2 18 18 C 1.54805 * 104.18820 * 242.60542 * 17 13 3 19 19 H 1.08997 * 110.91027 * 262.64874 * 18 17 13 20 20 C 1.53003 * 110.90774 * 139.07530 * 18 17 13 21 21 C 1.54996 * 102.09427 * 20.88109 * 18 17 13 22 22 O 1.43740 * 109.87837 * 56.15889 * 13 3 2 23 23 H 1.08996 * 109.46977 * 197.30469 * 1 2 3 24 24 H 1.09001 * 109.46737 * 317.30536 * 1 2 3 25 25 H 1.08997 * 109.46813 * 77.30746 * 1 2 3 26 26 H 1.09004 * 109.47193 * 239.99501 * 2 1 3 27 27 H 1.08997 * 109.47083 * 119.99801 * 2 1 3 28 28 H 0.97003 * 119.99969 * 4.64900 * 8 7 5 29 29 H 0.96698 * 117.00004 * 179.97438 * 16 14 13 30 30 H 1.09001 * 110.48752 * 1.28507 * 17 13 3 31 31 H 1.09005 * 110.48815 * 123.79376 * 17 13 3 32 32 H 1.09003 * 109.46765 * 60.00501 * 20 18 17 33 33 H 1.09000 * 109.47124 * 179.97438 * 20 18 17 34 34 H 1.08995 * 109.47503 * 300.00618 * 20 18 17 35 35 H 1.08996 * 110.61652 * 81.47483 * 21 18 17 36 36 H 1.08993 * 110.62144 * 204.31899 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1238 1.4447 0.1167 5 6 1.4103 2.1979 1.1418 6 1 0.8796 3.1192 0.9522 7 6 1.5117 1.7131 2.4285 8 7 2.4178 0.8054 2.7196 9 14 0.3622 2.3452 3.7582 10 1 -0.5585 3.3553 3.1774 11 1 1.1585 2.9691 4.8454 12 1 -0.4270 1.2143 4.3090 13 6 1.6682 2.1148 -1.3231 14 6 2.3912 1.4413 -2.4609 15 8 3.4523 0.8975 -2.2648 16 8 1.8566 1.4455 -3.6921 17 6 2.0431 3.6088 -1.2752 18 6 0.6889 4.3446 -1.4209 19 1 0.5205 4.6487 -2.4540 20 6 0.6187 5.5501 -0.4813 21 6 -0.3227 3.2508 -0.9936 22 8 0.2477 2.0370 -1.5286 23 1 -0.3633 -0.9811 0.3057 24 1 -0.3633 0.7553 0.6969 25 1 -0.3633 0.2258 -1.0025 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0584 0.5263 2.0467 29 1 2.3574 1.0010 -4.3897 30 1 2.5102 3.8545 -0.3215 31 1 2.7080 3.8620 -2.1011 32 1 1.4229 6.2455 -0.7218 33 1 -0.3421 6.0503 -0.6031 34 1 0.7256 5.2138 0.5499 35 1 -0.3923 3.1958 0.0928 36 1 -1.3026 3.4424 -1.4306 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718402468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:12 Heat of formation + Delta-G solvation = -160.761642 kcal Electronic energy + Delta-G solvation = -19579.092444 eV Core-core repulsion = 16641.462714 eV Total energy + Delta-G solvation = -2937.629730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.09726 -40.17196 -37.36637 -36.51992 -34.53121 -33.10955 -31.54133 -28.06757 -27.25973 -25.71054 -24.95675 -22.74501 -21.34324 -20.73888 -19.47104 -18.58475 -18.16160 -17.28406 -16.22152 -15.95204 -15.56542 -15.45593 -15.31814 -14.57687 -14.25101 -14.09114 -13.83987 -13.66677 -13.17353 -12.96358 -12.76898 -12.66082 -12.54730 -12.30516 -12.09072 -11.87467 -11.84889 -11.62488 -11.57258 -11.41014 -11.12017 -10.59132 -10.25534 -9.99464 -8.42685 -6.10800 1.03115 1.59055 1.65785 1.79475 2.04551 2.65983 3.02517 3.31119 3.63961 3.82482 3.85889 4.10492 4.44033 4.46578 4.54780 4.63070 4.68844 4.76527 4.79336 4.88040 5.01636 5.09807 5.11355 5.21451 5.31313 5.36158 5.42027 5.47253 5.52317 5.61519 5.79475 6.04416 6.18503 6.39984 6.72019 6.95918 7.61929 8.88417 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.012155 C = 0.009571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.124879 B = 2302.960002 C = 2924.826889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.109 4.109 3 C 0.039 3.961 4 H -0.010 1.010 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.017 4.017 8 N -0.934 5.934 9 Si 1.093 2.907 10 H -0.254 1.254 11 H -0.292 1.292 12 H -0.290 1.290 13 C 0.134 3.866 14 C 0.492 3.508 15 O -0.544 6.544 16 O -0.497 6.497 17 C -0.127 4.127 18 C -0.108 4.108 19 H 0.098 0.902 20 C -0.138 4.138 21 C 0.035 3.965 22 O -0.353 6.353 23 H 0.022 0.978 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.013 0.987 27 H 0.033 0.967 28 H 0.256 0.744 29 H 0.420 0.580 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 8.011 -9.690 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C 0.021 3.979 4 H 0.008 0.992 5 C -0.622 4.622 6 H 0.104 0.896 7 C -0.217 4.217 8 N -0.571 5.571 9 Si 0.917 3.083 10 H -0.178 1.178 11 H -0.218 1.218 12 H -0.216 1.216 13 C 0.092 3.908 14 C 0.335 3.665 15 O -0.435 6.435 16 O -0.309 6.309 17 C -0.165 4.165 18 C -0.126 4.126 19 H 0.116 0.884 20 C -0.195 4.195 21 C -0.041 4.041 22 O -0.272 6.272 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.281 0.719 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.559 7.708 -7.874 12.823 hybrid contribution 1.646 -0.708 -1.766 2.516 sum -4.913 7.000 -9.640 12.887 Atomic orbital electron populations 1.21670 0.94417 0.99151 1.02243 1.21382 0.97846 0.98181 0.97312 1.19113 0.94303 0.93051 0.91481 0.99224 1.22236 1.37235 1.10747 0.91977 0.89594 1.26808 0.98357 0.95193 1.01320 1.70816 1.16203 1.32818 1.37284 0.83298 0.74946 0.76235 0.73816 1.17753 1.21828 1.21648 1.21910 0.83175 0.96402 0.89285 1.23864 0.83239 0.75521 0.83864 1.90678 1.24721 1.43262 1.84835 1.84619 1.54136 1.72992 1.19137 1.22952 0.99672 0.90667 1.03218 1.22629 0.92592 0.96017 1.01394 0.88410 1.21704 1.03024 0.96261 0.98544 1.24140 0.97340 0.82191 1.00401 1.88866 1.16241 1.40975 1.81108 0.95864 0.91937 0.91616 0.96815 0.94871 0.93411 0.71932 0.89795 0.91033 0.91560 0.90332 0.93321 0.90746 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.63 71.98 0.62 -4.66 16 2 C -0.11 -5.48 5.15 30.60 0.16 -5.32 16 3 C 0.04 1.95 0.95 -11.54 -0.01 1.94 16 4 H -0.01 -0.59 7.26 -2.39 -0.02 -0.60 16 5 C -0.58 -29.08 4.85 25.60 0.12 -28.96 16 6 H 0.09 3.93 3.23 -2.91 -0.01 3.92 16 7 C -0.02 -0.93 4.85 84.65 0.41 -0.52 16 8 N -0.93 -55.69 12.64 21.45 0.27 -55.42 16 9 Si 1.09 47.34 29.94 68.60 2.05 49.40 16 10 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.13 5.46 0.76 -11.17 -0.01 5.45 16 14 C 0.49 19.49 6.09 71.23 0.43 19.93 16 15 O -0.54 -24.79 16.33 21.95 0.36 -24.43 16 16 O -0.50 -15.10 13.15 -46.45 -0.61 -15.71 16 17 C -0.13 -4.47 5.24 31.58 0.17 -4.30 16 18 C -0.11 -3.00 3.56 -9.49 -0.03 -3.04 16 19 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 20 C -0.14 -3.32 9.16 71.98 0.66 -2.66 16 21 C 0.03 1.10 6.49 72.66 0.47 1.57 16 22 O -0.35 -13.47 6.96 -135.43 -0.94 -14.41 16 23 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 2.91 6.31 -2.39 -0.02 2.89 16 25 H 0.07 2.75 6.04 -2.39 -0.01 2.74 16 26 H 0.01 0.66 6.87 -2.39 -0.02 0.64 16 27 H 0.03 1.84 6.11 -2.39 -0.01 1.83 16 28 H 0.26 15.89 6.43 -92.71 -0.60 15.30 16 29 H 0.42 8.26 9.10 -74.06 -0.67 7.59 16 30 H 0.08 3.29 6.55 -2.39 -0.02 3.28 16 31 H 0.07 2.27 7.69 -2.38 -0.02 2.25 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.38 7.13 -2.39 -0.02 1.36 16 35 H 0.07 2.68 5.14 -2.39 -0.01 2.67 16 36 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -65.91 274.64 4.72 -61.19 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.60 Total: 19.96 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 2.99 Total: -20.57 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.27 Total: -55.42 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -1.20 Total: -54.55 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.05 Total: 49.40 kcal Total: -65.91 4.72 -61.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718402468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.575 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds