Wall clock time and date at job start Mon Mar 30 2020 03:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48496 * 109.47010 * 270.00242 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99857 * 3 2 1 6 6 H 1.48492 * 109.47392 * 150.00169 * 3 2 1 7 7 C 1.38809 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.17043 * 35.71787 * 10 9 7 12 12 C 1.52624 * 109.17451 * 276.48630 * 10 9 7 13 13 C 1.53432 * 107.81464 * 298.26904 * 12 10 9 14 14 C 1.52497 * 107.95812 * 299.03853 * 13 12 10 15 15 N 1.47422 * 111.29297 * 60.71771 * 14 13 12 16 16 C 1.47433 * 106.69730 * 178.71390 * 15 14 13 17 17 C 1.52758 * 111.24830 * 195.34121 * 16 15 14 18 18 S 1.82059 * 107.67219 * 296.50650 * 17 16 15 19 19 C 1.81546 * 101.26386 * 52.75713 * 18 17 16 20 20 C 1.46284 * 112.69025 * 302.78174 * 15 14 13 21 21 H 1.09000 * 109.66948 * 291.69090 * 20 15 14 22 22 H 0.97000 * 120.00165 * 0.02562 * 1 2 3 23 23 H 0.97004 * 120.00110 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.79134 * 57.84756 * 12 10 9 25 25 H 1.09000 * 109.79428 * 178.63678 * 12 10 9 26 26 H 1.09001 * 109.75880 * 58.65759 * 13 12 10 27 27 H 1.09004 * 109.76162 * 179.36951 * 13 12 10 28 28 H 1.09000 * 109.11222 * 181.18382 * 14 13 12 29 29 H 1.09002 * 109.11500 * 300.30988 * 14 13 12 30 30 H 1.08999 * 109.12951 * 74.88672 * 16 15 14 31 31 H 1.09003 * 109.12645 * 315.79026 * 16 15 14 32 32 H 1.08997 * 109.82274 * 176.96252 * 17 16 15 33 33 H 1.09002 * 109.82135 * 56.04640 * 17 16 15 34 34 H 1.09005 * 109.45054 * 68.10798 * 19 18 17 35 35 H 1.09000 * 109.45003 * 188.04714 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9612 -3.5487 0.6016 12 6 2.4500 -4.0094 -1.4318 13 6 1.1589 -4.1784 -2.2434 14 6 0.3579 -5.3170 -1.6211 15 7 0.0026 -5.0191 -0.2217 16 6 -0.7897 -6.1625 0.2668 17 6 -1.5273 -5.8136 1.5582 18 16 -0.2750 -5.4646 2.8329 19 6 0.7479 -4.2213 1.9940 20 6 1.1734 -4.7493 0.6127 21 1 1.7550 -5.6630 0.7353 22 1 -0.4850 0.8400 -0.0004 23 1 0.3557 -2.3881 0.0005 24 1 3.0516 -3.2067 -1.8582 25 1 3.0171 -4.9402 -1.4409 26 1 0.5781 -3.2567 -2.2080 27 1 1.4029 -4.4206 -3.2778 28 1 -0.5552 -5.4674 -2.1970 29 1 0.9529 -6.2299 -1.6508 30 1 -0.1238 -7.0052 0.4525 31 1 -1.5170 -6.4444 -0.4947 32 1 -2.1465 -6.6549 1.8691 33 1 -2.1504 -4.9331 1.4016 34 1 0.1743 -3.3027 1.8705 35 1 1.6353 -4.0172 2.5932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720436542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:45 Heat of formation + Delta-G solvation = 16.177968 kcal Electronic energy + Delta-G solvation = -16544.922007 eV Core-core repulsion = 14090.010576 eV Total energy + Delta-G solvation = -2454.911431 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23662 -35.04474 -33.07123 -32.00851 -30.15055 -28.77025 -26.44824 -23.89722 -23.03006 -22.11895 -20.91515 -18.49982 -17.30106 -16.21497 -15.49504 -15.07345 -14.49061 -14.15602 -13.99120 -13.78126 -13.43132 -13.04217 -12.90386 -12.55448 -12.07515 -11.80134 -11.46130 -11.30262 -10.95818 -10.88141 -10.72548 -10.42598 -10.32398 -10.13222 -9.76195 -9.60793 -9.23095 -8.86876 -8.09752 -7.40663 -6.88118 -5.72854 -3.00782 2.13027 2.83136 3.44440 3.50118 3.51515 3.98969 4.61291 4.98172 5.05628 5.23313 5.32063 5.43289 5.51409 5.53535 5.59655 5.69611 5.77604 5.81340 5.86127 5.93639 6.02652 6.07087 6.16842 6.42213 6.53814 6.62760 6.63975 6.91658 7.04641 7.26118 7.44566 7.72601 8.45618 9.58097 10.16377 10.54387 11.49045 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.008371 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.683089 B = 3343.966019 C = 3876.725891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.903 3.097 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.712 5.712 10 C 0.182 3.818 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.113 4.113 14 C 0.063 3.937 15 N -0.521 5.521 16 C 0.049 3.951 17 C -0.070 4.070 18 S -0.305 6.305 19 C -0.055 4.055 20 C 0.088 3.912 21 H 0.045 0.955 22 H 0.254 0.746 23 H 0.392 0.608 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -12.900 -0.711 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.734 3.266 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.355 5.355 10 C 0.070 3.930 11 H 0.068 0.932 12 C -0.179 4.179 13 C -0.151 4.151 14 C -0.065 4.065 15 N -0.247 5.247 16 C -0.081 4.081 17 C -0.219 4.219 18 S -0.078 6.078 19 C -0.203 4.203 20 C -0.023 4.023 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.228 0.772 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.406 -12.750 0.421 12.764 hybrid contribution 0.541 0.765 -1.221 1.539 sum 0.135 -11.985 -0.800 12.013 Atomic orbital electron populations 1.69675 1.04971 1.25472 1.57537 1.24696 0.95427 0.97446 1.03156 0.86261 0.78673 0.84259 0.77401 1.21909 1.21895 1.20895 1.19220 0.90886 0.84204 1.42684 0.91430 1.42440 1.06141 0.98895 1.88040 1.20296 0.93197 0.86315 0.93200 0.93227 1.22221 0.96824 0.99621 0.99207 1.21480 0.97083 0.99484 0.97053 1.22047 0.99011 0.96996 0.88442 1.62122 1.21944 1.38344 1.02272 1.22344 0.97252 0.92309 0.96167 1.23360 0.98322 1.05133 0.95089 1.86685 1.35482 1.56578 1.29014 1.23727 1.01344 0.99088 0.96159 1.22094 0.90525 0.97677 0.92026 0.93739 0.93614 0.77212 0.91506 0.94103 0.89382 0.92794 0.91343 0.95788 0.94014 0.90160 0.88104 0.88815 0.87058 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.37 9.90 -15.06 -0.15 -6.52 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.71 -16.91 3.32 -53.44 -0.18 -17.09 16 10 C 0.18 3.51 2.43 -67.94 -0.17 3.35 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.42 5.70 -26.70 -0.15 -2.57 16 13 C -0.11 -1.89 6.00 -26.76 -0.16 -2.05 16 14 C 0.06 0.92 5.08 -3.79 -0.02 0.90 16 15 N -0.52 -8.37 4.50 -225.94 -1.02 -9.39 16 16 C 0.05 0.65 5.08 -3.66 -0.02 0.63 16 17 C -0.07 -0.96 6.73 37.03 0.25 -0.71 16 18 S -0.30 -4.87 22.42 -107.50 -2.41 -7.28 16 19 C -0.05 -0.98 5.45 37.62 0.21 -0.77 16 20 C 0.09 1.49 1.99 -67.41 -0.13 1.36 16 21 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 22 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.39 10.16 6.92 -40.82 -0.28 9.87 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.80 7.49 -51.93 -0.39 1.41 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 29 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 31 H 0.08 0.93 7.67 -51.93 -0.40 0.53 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.11 2.36 6.84 -51.92 -0.36 2.00 16 35 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 282.07 15.07 4.25 4.25 Total: -1.00 -28.29 282.07 -9.68 -37.98 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.59 Total: 7.97 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.44 Total: -6.78 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.47 Total: -53.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.41 Total: -7.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.29 -9.68 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720436542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.155 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds