Wall clock time and date at job start Mon Mar 30 2020 03:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48496 * 109.47010 * 270.00242 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99857 * 3 2 1 6 6 H 1.48492 * 109.47392 * 150.00169 * 3 2 1 7 7 C 1.38809 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.17043 * 35.71787 * 10 9 7 12 12 C 1.52624 * 109.17451 * 276.48630 * 10 9 7 13 13 C 1.53432 * 107.81464 * 298.26904 * 12 10 9 14 14 C 1.52497 * 107.95812 * 299.03853 * 13 12 10 15 15 N 1.47422 * 111.29297 * 60.71771 * 14 13 12 16 16 C 1.47433 * 106.69730 * 178.71390 * 15 14 13 17 17 C 1.52758 * 111.24830 * 195.34121 * 16 15 14 18 18 S 1.82059 * 107.67219 * 296.50650 * 17 16 15 19 19 C 1.81546 * 101.26386 * 52.75713 * 18 17 16 20 20 C 1.46284 * 112.69025 * 302.78174 * 15 14 13 21 21 H 1.09000 * 109.66948 * 291.69090 * 20 15 14 22 22 H 0.97000 * 120.00165 * 0.02562 * 1 2 3 23 23 H 0.97004 * 120.00110 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.79134 * 57.84756 * 12 10 9 25 25 H 1.09000 * 109.79428 * 178.63678 * 12 10 9 26 26 H 1.09001 * 109.75880 * 58.65759 * 13 12 10 27 27 H 1.09004 * 109.76162 * 179.36951 * 13 12 10 28 28 H 1.09000 * 109.11222 * 181.18382 * 14 13 12 29 29 H 1.09002 * 109.11500 * 300.30988 * 14 13 12 30 30 H 1.08999 * 109.12951 * 74.88672 * 16 15 14 31 31 H 1.09003 * 109.12645 * 315.79026 * 16 15 14 32 32 H 1.08997 * 109.82274 * 176.96252 * 17 16 15 33 33 H 1.09002 * 109.82135 * 56.04640 * 17 16 15 34 34 H 1.09005 * 109.45054 * 68.10798 * 19 18 17 35 35 H 1.09000 * 109.45003 * 188.04714 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9612 -3.5487 0.6016 12 6 2.4500 -4.0094 -1.4318 13 6 1.1589 -4.1784 -2.2434 14 6 0.3579 -5.3170 -1.6211 15 7 0.0026 -5.0191 -0.2217 16 6 -0.7897 -6.1625 0.2668 17 6 -1.5273 -5.8136 1.5582 18 16 -0.2750 -5.4646 2.8329 19 6 0.7479 -4.2213 1.9940 20 6 1.1734 -4.7493 0.6127 21 1 1.7550 -5.6630 0.7353 22 1 -0.4850 0.8400 -0.0004 23 1 0.3557 -2.3881 0.0005 24 1 3.0516 -3.2067 -1.8582 25 1 3.0171 -4.9402 -1.4409 26 1 0.5781 -3.2567 -2.2080 27 1 1.4029 -4.4206 -3.2778 28 1 -0.5552 -5.4674 -2.1970 29 1 0.9529 -6.2299 -1.6508 30 1 -0.1238 -7.0052 0.4525 31 1 -1.5170 -6.4444 -0.4947 32 1 -2.1465 -6.6549 1.8691 33 1 -2.1504 -4.9331 1.4016 34 1 0.1743 -3.3027 1.8705 35 1 1.6353 -4.0172 2.5932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720436542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:45 Heat of formation + Delta-G solvation = -1.702667 kcal Electronic energy + Delta-G solvation = -16545.697370 eV Core-core repulsion = 14090.010576 eV Total energy + Delta-G solvation = -2455.686793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57974 -36.58317 -34.62085 -33.63939 -31.63056 -30.33012 -27.90697 -25.75433 -24.36685 -23.48933 -22.17521 -19.96815 -19.24353 -17.53484 -16.79135 -16.64824 -16.10550 -15.56785 -15.40067 -15.28923 -14.93815 -14.44121 -14.33195 -13.97457 -13.44278 -13.20757 -12.87022 -12.83522 -12.74570 -12.52671 -12.18586 -12.12019 -11.81358 -11.79441 -11.47000 -11.13422 -10.86376 -10.52552 -9.29624 -8.90487 -8.64140 -7.86949 -5.12441 0.88853 1.47854 1.48157 1.55966 1.56327 2.58920 2.81259 3.44456 3.72442 3.87443 3.95313 4.06608 4.18598 4.26251 4.32384 4.39799 4.43470 4.52123 4.57597 4.70864 4.74253 4.87454 4.91468 4.97474 5.12618 5.13031 5.18282 5.49888 5.53739 5.64462 6.09314 6.19955 6.34732 7.42545 8.21484 8.47064 9.35968 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.008371 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.683089 B = 3343.966019 C = 3876.725891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.963 3.037 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.229 4.229 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.175 3.825 11 H 0.043 0.957 12 C -0.132 4.132 13 C -0.109 4.109 14 C 0.066 3.934 15 N -0.546 5.546 16 C 0.051 3.949 17 C -0.065 4.065 18 S -0.309 6.309 19 C -0.051 4.051 20 C 0.102 3.898 21 H 0.062 0.938 22 H 0.247 0.753 23 H 0.380 0.620 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -15.193 -1.261 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.793 3.207 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.362 4.362 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.064 3.936 11 H 0.061 0.939 12 C -0.172 4.172 13 C -0.147 4.147 14 C -0.061 4.061 15 N -0.272 5.272 16 C -0.078 4.078 17 C -0.213 4.213 18 S -0.082 6.082 19 C -0.200 4.200 20 C -0.009 4.009 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.214 0.786 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.023 -15.087 -0.133 15.088 hybrid contribution 0.418 1.378 -1.037 1.775 sum 0.441 -13.709 -1.170 13.766 Atomic orbital electron populations 1.69832 1.06369 1.25474 1.60007 1.25391 0.96168 1.00476 1.04561 0.85286 0.77743 0.80494 0.77134 1.21866 1.22723 1.19716 1.19569 0.91175 0.85394 1.40025 0.91094 1.42502 1.05616 0.99820 1.87951 1.20526 0.93080 0.85424 0.94551 0.93906 1.22107 0.97381 1.00273 0.97459 1.21407 0.96237 0.98502 0.98592 1.22049 0.99859 0.96625 0.87572 1.62075 1.21763 1.40401 1.02943 1.22409 0.97525 0.91396 0.96450 1.23505 0.97563 1.05693 0.94542 1.86661 1.36091 1.55122 1.30344 1.23487 1.00946 0.98286 0.97290 1.21865 0.90813 0.97051 0.91191 0.92071 0.94442 0.78648 0.93670 0.90970 0.93816 0.90501 0.89680 0.93446 0.92818 0.87583 0.84905 0.90314 0.91170 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.96 46.58 29.55 68.60 2.03 48.60 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.23 -12.49 9.90 84.03 0.83 -11.65 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.72 -34.90 3.32 -322.98 -1.07 -35.97 16 10 C 0.17 6.67 2.43 44.98 0.11 6.78 16 11 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 12 C -0.13 -4.43 5.70 30.61 0.17 -4.25 16 13 C -0.11 -3.48 6.00 30.57 0.18 -3.30 16 14 C 0.07 1.73 5.08 86.04 0.44 2.17 16 15 N -0.55 -16.38 4.50 -868.73 -3.91 -20.30 16 16 C 0.05 1.18 5.08 86.12 0.44 1.62 16 17 C -0.06 -1.59 6.73 71.90 0.48 -1.11 16 18 S -0.31 -9.47 22.42 -56.49 -1.27 -10.74 16 19 C -0.05 -1.83 5.45 72.28 0.39 -1.44 16 20 C 0.10 3.32 1.99 45.45 0.09 3.41 16 21 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 22 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 23 H 0.38 20.41 6.92 -92.71 -0.64 19.76 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.79 7.49 -2.39 -0.02 1.77 16 27 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.08 1.98 7.84 -2.39 -0.02 1.96 16 29 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.05 1.16 8.02 -2.39 -0.02 1.14 16 31 H 0.11 1.96 7.67 -2.39 -0.02 1.95 16 32 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 3.09 6.84 -2.39 -0.02 3.08 16 35 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -62.41 282.07 0.09 -62.32 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.42 Total: 26.58 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.61 Total: -11.52 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -4.70 Total: -115.25 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.27 Total: -10.74 kcal Total: -62.41 0.09 -62.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720436542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.616 kcal (2) G-P(sol) polarization free energy of solvation -62.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds