Wall clock time and date at job start Mon Mar 30 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48508 * 109.46773 * 269.99847 * 3 2 1 5 5 H 1.48497 * 109.47332 * 29.99875 * 3 2 1 6 6 H 1.48498 * 109.46984 * 150.00138 * 3 2 1 7 7 C 1.38811 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00498 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.12693 * 35.74571 * 10 9 7 12 12 C 1.52628 * 109.17389 * 276.49127 * 10 9 7 13 13 C 1.53430 * 107.82059 * 180.96944 * 12 10 9 14 14 C 1.52500 * 107.96046 * 60.95133 * 13 12 10 15 15 N 1.47426 * 111.28130 * 299.27702 * 14 13 12 16 16 C 1.47436 * 106.69611 * 181.32374 * 15 14 13 17 17 C 1.52758 * 111.24632 * 164.65905 * 16 15 14 18 18 S 1.81968 * 107.65830 * 63.50273 * 17 16 15 19 19 C 1.81546 * 101.29688 * 307.22049 * 18 17 16 20 20 C 1.46278 * 112.69047 * 57.24636 * 15 14 13 21 21 H 1.09005 * 109.52575 * 68.38149 * 20 15 14 22 22 H 0.96998 * 119.99682 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99237 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.79269 * 61.39019 * 12 10 9 25 25 H 1.08995 * 109.79029 * 300.54780 * 12 10 9 26 26 H 1.09000 * 109.76144 * 301.33103 * 13 12 10 27 27 H 1.09005 * 109.80259 * 180.59313 * 13 12 10 28 28 H 1.08990 * 109.11834 * 178.80839 * 14 13 12 29 29 H 1.09004 * 109.06674 * 59.70469 * 14 13 12 30 30 H 1.08997 * 109.12369 * 285.11757 * 16 15 14 31 31 H 1.09003 * 109.12435 * 44.20681 * 16 15 14 32 32 H 1.08994 * 109.81833 * 183.04483 * 17 16 15 33 33 H 1.08998 * 109.81916 * 303.89283 * 17 16 15 34 34 H 1.09002 * 109.44880 * 291.91283 * 19 18 17 35 35 H 1.08997 * 109.44539 * 171.96904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0027 11 1 2.9605 -3.5476 0.6042 12 6 2.4499 -4.0107 -1.4293 13 6 3.1919 -5.3532 -1.3950 14 6 2.2384 -6.4033 -0.8350 15 7 1.8114 -6.0625 0.5343 16 6 0.9260 -7.1517 0.9854 17 6 0.7234 -7.1095 2.4989 18 16 -0.1240 -5.5497 2.8991 19 6 0.9552 -4.3392 2.0830 20 6 1.1731 -4.7489 0.6158 21 1 0.2138 -4.7773 0.0991 22 1 -0.4849 0.8401 0.0004 23 1 0.3556 -2.3881 0.0023 24 1 3.1033 -3.2382 -1.8349 25 1 1.5552 -4.0992 -2.0455 26 1 4.0696 -5.2728 -0.7537 27 1 3.4968 -5.6325 -2.4036 28 1 2.7404 -7.3707 -0.8220 29 1 1.3601 -6.4657 -1.4776 30 1 -0.0412 -7.0528 0.4927 31 1 1.3692 -8.1090 0.7110 32 1 0.1107 -7.9543 2.8134 33 1 1.6895 -7.1463 3.0022 34 1 1.9159 -4.3050 2.5968 35 1 0.4889 -3.3547 2.1195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720436551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:53 Heat of formation + Delta-G solvation = 12.129979 kcal Electronic energy + Delta-G solvation = -16256.732225 eV Core-core repulsion = 13801.645260 eV Total energy + Delta-G solvation = -2455.086965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25117 -35.20180 -33.40132 -32.04289 -30.28997 -28.90391 -26.40290 -24.03937 -23.18515 -21.50606 -21.03379 -19.40313 -17.22399 -16.31979 -15.69531 -15.08258 -14.61323 -14.25413 -14.02991 -13.68812 -13.47681 -13.18326 -12.97383 -12.60997 -12.40888 -11.95729 -11.57186 -11.16779 -11.01498 -10.90506 -10.76791 -10.63814 -10.42045 -10.21193 -9.93241 -9.66262 -9.33263 -8.88650 -8.29064 -7.45381 -6.99963 -5.79350 -3.09129 2.04992 2.78546 3.42235 3.47645 3.49305 3.83962 4.57279 4.87016 4.96966 5.11811 5.20265 5.31047 5.36067 5.46989 5.52809 5.60301 5.63127 5.71648 5.81953 5.84519 5.90321 6.06238 6.11948 6.31929 6.38004 6.44384 6.52966 6.84618 6.97748 7.06605 7.30143 7.68664 8.38297 9.49677 10.04561 10.39649 11.42947 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.007573 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.247457 B = 3696.320993 C = 4463.145926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.723 5.723 10 C 0.187 3.813 11 H 0.054 0.946 12 C -0.137 4.137 13 C -0.119 4.119 14 C 0.058 3.942 15 N -0.530 5.530 16 C 0.048 3.952 17 C -0.075 4.075 18 S -0.291 6.291 19 C -0.055 4.055 20 C 0.085 3.915 21 H 0.051 0.949 22 H 0.256 0.744 23 H 0.383 0.617 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -14.920 0.760 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.075 3.925 11 H 0.072 0.928 12 C -0.177 4.177 13 C -0.158 4.158 14 C -0.070 4.070 15 N -0.256 5.256 16 C -0.082 4.082 17 C -0.224 4.224 18 S -0.063 6.063 19 C -0.204 4.204 20 C -0.026 4.026 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.217 0.783 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.826 -14.554 1.742 14.928 hybrid contribution 0.468 0.749 -1.219 1.505 sum 3.294 -13.805 0.523 14.202 Atomic orbital electron populations 1.69659 1.05090 1.25733 1.57444 1.24735 0.95490 0.97661 1.02849 0.86208 0.78695 0.83896 0.77497 1.21751 1.21776 1.20732 1.19193 0.90984 0.83828 1.42986 0.91111 1.42435 1.05737 0.99589 1.88715 1.20214 0.93983 0.85184 0.93091 0.92780 1.22301 0.99772 0.95479 1.00176 1.21609 0.98517 0.95689 0.99944 1.22067 0.98044 0.98760 0.88100 1.62233 1.39545 1.01210 1.22603 1.22345 0.96321 0.95263 0.94257 1.23361 1.03341 0.97311 0.98402 1.86930 1.41469 1.04258 1.73683 1.23745 1.01009 0.99633 0.95999 1.22063 0.97068 0.88570 0.94862 0.93093 0.93459 0.78306 0.91453 0.92755 0.91336 0.91965 0.91210 0.95040 0.93575 0.90156 0.87976 0.89285 0.89607 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.44 9.90 -15.06 -0.15 -6.59 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.50 4.27 -53.44 -0.23 -17.72 16 10 C 0.19 3.66 2.13 -67.94 -0.14 3.51 16 11 H 0.05 1.12 8.02 -51.93 -0.42 0.70 16 12 C -0.14 -2.41 5.59 -26.70 -0.15 -2.56 16 13 C -0.12 -1.65 6.13 -26.76 -0.16 -1.81 16 14 C 0.06 0.75 5.08 -3.79 -0.02 0.73 16 15 N -0.53 -7.65 4.72 -225.93 -1.07 -8.72 16 16 C 0.05 0.59 5.08 -3.65 -0.02 0.57 16 17 C -0.08 -0.92 6.73 37.03 0.25 -0.67 16 18 S -0.29 -4.62 22.41 -107.50 -2.41 -7.03 16 19 C -0.06 -0.98 5.59 37.62 0.21 -0.77 16 20 C 0.09 1.47 1.85 -67.41 -0.12 1.34 16 21 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.38 9.97 7.70 -40.82 -0.31 9.66 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 29 H 0.03 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.05 0.60 8.02 -51.93 -0.42 0.19 16 31 H 0.08 0.80 7.67 -51.93 -0.40 0.40 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.52 8.13 -51.92 -0.42 1.10 16 35 H 0.12 2.53 7.38 -51.93 -0.38 2.15 16 LS Contribution 284.84 15.07 4.29 4.29 Total: -1.00 -28.55 284.84 -9.80 -38.35 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.68 Total: 7.33 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.41 Total: -6.66 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.57 Total: -53.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -2.41 Total: -7.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.55 -9.80 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720436551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.477 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds