Wall clock time and date at job start Mon Mar 30 2020 03:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48508 * 109.46773 * 269.99847 * 3 2 1 5 5 H 1.48497 * 109.47332 * 29.99875 * 3 2 1 6 6 H 1.48498 * 109.46984 * 150.00138 * 3 2 1 7 7 C 1.38811 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00389 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00498 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.12693 * 35.74571 * 10 9 7 12 12 C 1.52628 * 109.17389 * 276.49127 * 10 9 7 13 13 C 1.53430 * 107.82059 * 180.96944 * 12 10 9 14 14 C 1.52500 * 107.96046 * 60.95133 * 13 12 10 15 15 N 1.47426 * 111.28130 * 299.27702 * 14 13 12 16 16 C 1.47436 * 106.69611 * 181.32374 * 15 14 13 17 17 C 1.52758 * 111.24632 * 164.65905 * 16 15 14 18 18 S 1.81968 * 107.65830 * 63.50273 * 17 16 15 19 19 C 1.81546 * 101.29688 * 307.22049 * 18 17 16 20 20 C 1.46278 * 112.69047 * 57.24636 * 15 14 13 21 21 H 1.09005 * 109.52575 * 68.38149 * 20 15 14 22 22 H 0.96998 * 119.99682 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99237 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.79269 * 61.39019 * 12 10 9 25 25 H 1.08995 * 109.79029 * 300.54780 * 12 10 9 26 26 H 1.09000 * 109.76144 * 301.33103 * 13 12 10 27 27 H 1.09005 * 109.80259 * 180.59313 * 13 12 10 28 28 H 1.08990 * 109.11834 * 178.80839 * 14 13 12 29 29 H 1.09004 * 109.06674 * 59.70469 * 14 13 12 30 30 H 1.08997 * 109.12369 * 285.11757 * 16 15 14 31 31 H 1.09003 * 109.12435 * 44.20681 * 16 15 14 32 32 H 1.08994 * 109.81833 * 183.04483 * 17 16 15 33 33 H 1.08998 * 109.81916 * 303.89283 * 17 16 15 34 34 H 1.09002 * 109.44880 * 291.91283 * 19 18 17 35 35 H 1.08997 * 109.44539 * 171.96904 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0027 11 1 2.9605 -3.5476 0.6042 12 6 2.4499 -4.0107 -1.4293 13 6 3.1919 -5.3532 -1.3950 14 6 2.2384 -6.4033 -0.8350 15 7 1.8114 -6.0625 0.5343 16 6 0.9260 -7.1517 0.9854 17 6 0.7234 -7.1095 2.4989 18 16 -0.1240 -5.5497 2.8991 19 6 0.9552 -4.3392 2.0830 20 6 1.1731 -4.7489 0.6158 21 1 0.2138 -4.7773 0.0991 22 1 -0.4849 0.8401 0.0004 23 1 0.3556 -2.3881 0.0023 24 1 3.1033 -3.2382 -1.8349 25 1 1.5552 -4.0992 -2.0455 26 1 4.0696 -5.2728 -0.7537 27 1 3.4968 -5.6325 -2.4036 28 1 2.7404 -7.3707 -0.8220 29 1 1.3601 -6.4657 -1.4776 30 1 -0.0412 -7.0528 0.4927 31 1 1.3692 -8.1090 0.7110 32 1 0.1107 -7.9543 2.8134 33 1 1.6895 -7.1463 3.0022 34 1 1.9159 -4.3050 2.5968 35 1 0.4889 -3.3547 2.1195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720436551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:52 Heat of formation + Delta-G solvation = -6.616053 kcal Electronic energy + Delta-G solvation = -16257.545114 eV Core-core repulsion = 13801.645260 eV Total energy + Delta-G solvation = -2455.899854 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55297 -36.78425 -34.81440 -33.73153 -31.75890 -30.38322 -27.86356 -25.85377 -24.44652 -22.94002 -22.25930 -20.82817 -19.17009 -17.65568 -17.04002 -16.47343 -16.23737 -15.58858 -15.37726 -15.24072 -14.94517 -14.58737 -14.33262 -14.03403 -13.76707 -13.22068 -12.96388 -12.83843 -12.70262 -12.45552 -12.21890 -12.12020 -12.00232 -11.84603 -11.59184 -11.22741 -10.96489 -10.54704 -9.45881 -9.02766 -8.72908 -7.94937 -5.23994 0.82891 1.46482 1.47613 1.55824 1.56056 2.51070 2.73273 3.37697 3.66012 3.78391 3.86357 4.03647 4.10324 4.20899 4.26032 4.30327 4.43431 4.50564 4.56212 4.65806 4.71622 4.81028 4.88515 4.95327 5.03312 5.11215 5.14610 5.39163 5.48741 5.53680 5.96230 6.03027 6.27085 7.32284 8.05004 8.29318 9.28297 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.007573 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.247457 B = 3696.320993 C = 4463.145926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.733 5.733 10 C 0.186 3.814 11 H 0.043 0.957 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.056 3.944 15 N -0.533 5.533 16 C 0.046 3.954 17 C -0.061 4.061 18 S -0.321 6.321 19 C -0.049 4.049 20 C 0.103 3.897 21 H 0.031 0.969 22 H 0.250 0.750 23 H 0.370 0.630 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -17.498 0.523 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.075 3.925 11 H 0.061 0.939 12 C -0.172 4.172 13 C -0.148 4.148 14 C -0.071 4.071 15 N -0.259 5.259 16 C -0.083 4.083 17 C -0.209 4.209 18 S -0.093 6.093 19 C -0.197 4.197 20 C -0.009 4.009 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.202 0.798 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.355 -17.180 1.500 17.787 hybrid contribution 0.029 1.417 -1.128 1.812 sum 4.384 -15.763 0.372 16.366 Atomic orbital electron populations 1.69820 1.06578 1.25944 1.59601 1.25507 0.96287 1.00908 1.03860 0.85195 0.77755 0.79786 0.77372 1.21473 1.22406 1.19447 1.19535 0.91297 0.84932 1.40860 0.90712 1.42579 1.05234 1.00772 1.88765 1.20368 0.93417 0.84270 0.94402 0.93910 1.22152 0.99452 0.97658 0.97958 1.21568 0.98177 0.93301 1.01751 1.22199 0.98033 0.99887 0.86992 1.62277 1.39533 1.00193 1.23872 1.22476 0.96005 0.95840 0.93960 1.23534 1.03676 0.95084 0.98611 1.87005 1.42083 1.06650 1.73603 1.23455 1.00687 0.98805 0.96786 1.21713 0.95576 0.89839 0.93745 0.95127 0.94120 0.79817 0.93314 0.93845 0.91142 0.89370 0.87524 0.95061 0.94263 0.86227 0.84952 0.88460 0.90032 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.23 -12.95 9.90 84.03 0.83 -12.12 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -36.89 4.27 -322.98 -1.38 -38.27 16 10 C 0.19 7.37 2.13 44.99 0.10 7.47 16 11 H 0.04 1.79 8.02 -2.39 -0.02 1.78 16 12 C -0.13 -4.61 5.59 30.62 0.17 -4.44 16 13 C -0.11 -2.73 6.13 30.57 0.19 -2.55 16 14 C 0.06 1.24 5.08 86.04 0.44 1.68 16 15 N -0.53 -14.01 4.72 -868.71 -4.10 -18.11 16 16 C 0.05 0.96 5.08 86.12 0.44 1.39 16 17 C -0.06 -1.28 6.73 71.90 0.48 -0.80 16 18 S -0.32 -10.01 22.41 -56.49 -1.27 -11.28 16 19 C -0.05 -1.77 5.59 72.28 0.40 -1.36 16 20 C 0.10 3.54 1.85 45.45 0.08 3.62 16 21 H 0.03 1.18 8.04 -2.38 -0.02 1.16 16 22 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 23 H 0.37 20.33 7.70 -92.71 -0.71 19.62 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.11 1.70 7.84 -2.39 -0.02 1.68 16 29 H 0.03 0.72 8.13 -2.38 -0.02 0.70 16 30 H 0.04 0.91 8.02 -2.39 -0.02 0.89 16 31 H 0.12 1.67 7.67 -2.39 -0.02 1.65 16 32 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.95 8.13 -2.39 -0.02 2.93 16 35 H 0.09 3.75 7.38 -2.39 -0.02 3.73 16 Total: -1.00 -63.76 284.84 -0.49 -64.25 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.35 Total: 25.20 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 3.60 Total: -10.85 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -5.20 Total: -115.78 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: -10.01 SS G_CDS: -1.27 Total: -11.28 kcal Total: -63.76 -0.49 -64.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720436551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.634 kcal (2) G-P(sol) polarization free energy of solvation -63.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds