Wall clock time and date at job start Mon Mar 30 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48504 * 109.46849 * 270.00167 * 3 2 1 5 5 H 1.48499 * 109.46967 * 29.99599 * 3 2 1 6 6 H 1.48495 * 109.47437 * 150.00056 * 3 2 1 7 7 C 1.39585 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00159 * 359.97438 * 7 2 1 9 9 N 1.36120 * 119.99652 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00160 * 179.97438 * 9 7 2 11 11 O 1.21510 * 119.99568 * 0.02562 * 10 9 7 12 12 C 1.48825 * 120.00320 * 179.97438 * 10 9 7 13 13 O 1.21439 * 119.99961 * 0.02562 * 12 10 9 14 14 N 1.34783 * 120.00138 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00028 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47017 * 180.02562 * 15 14 12 17 17 H 1.09004 * 112.84496 * 43.80429 * 16 15 14 18 18 C 1.53778 * 113.61196 * 174.99730 * 16 15 14 19 19 C 1.53787 * 87.08035 * 140.06532 * 18 16 15 20 20 H 1.08994 * 113.61447 * 220.02014 * 19 18 16 21 21 O 1.42895 * 113.61204 * 89.11388 * 19 18 16 22 22 C 1.53778 * 113.68969 * 272.53495 * 16 15 14 23 23 H 0.97010 * 119.99915 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00237 * 359.97438 * 9 7 2 25 25 H 0.96999 * 119.99784 * 0.02562 * 14 12 10 26 26 H 1.08994 * 109.47253 * 60.00133 * 15 14 12 27 27 H 1.08999 * 109.47048 * 300.00272 * 15 14 12 28 28 H 1.08998 * 113.61879 * 25.52015 * 18 16 15 29 29 H 1.08999 * 113.61887 * 254.61122 * 18 16 15 30 30 H 0.96703 * 114.00032 * 180.02562 * 21 19 18 31 31 H 1.08993 * 113.61229 * 105.46192 * 22 16 15 32 32 H 1.09000 * 113.61263 * 334.55842 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 1.4680 -2.1441 0.0014 9 7 3.3692 -1.2089 0.0011 10 6 4.0431 -2.3760 0.0021 11 8 3.4355 -3.4283 0.0021 12 6 5.5314 -2.3760 0.0021 13 8 6.1386 -1.3244 0.0016 14 7 6.2053 -3.5433 0.0037 15 6 7.6703 -3.5433 0.0042 16 6 8.1803 -4.9858 0.0054 17 1 7.6381 -5.6269 -0.6897 18 6 9.7090 -5.0987 -0.1168 19 6 9.6285 -6.2376 0.9135 20 1 10.4343 -6.2205 1.6471 21 8 9.4367 -7.5268 0.3277 22 6 8.3270 -5.5881 1.4127 23 1 -0.4850 0.8401 -0.0004 24 1 3.8542 -0.3688 0.0007 25 1 5.7203 -4.3833 0.0044 26 1 8.0333 -3.0285 0.8937 27 1 8.0339 -3.0304 -0.8861 28 1 10.2422 -4.2196 0.2451 29 1 10.0456 -5.4236 -1.1013 30 1 9.3849 -8.2472 0.9707 31 1 7.5478 -6.3081 1.6628 32 1 8.4822 -4.8427 2.1927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720938667.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:25 Heat of formation + Delta-G solvation = -99.594021 kcal Electronic energy + Delta-G solvation = -16907.665722 eV Core-core repulsion = 13869.148076 eV Total energy + Delta-G solvation = -3038.517647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.03381 -39.28361 -37.34398 -35.59760 -34.46864 -33.49587 -31.86661 -28.22945 -26.00653 -25.80510 -23.28560 -21.78921 -20.11737 -19.33621 -18.92246 -17.45709 -16.82811 -16.09092 -15.68366 -15.18074 -15.09134 -14.84797 -14.41700 -13.71519 -13.51439 -13.12365 -12.77644 -12.66118 -12.59863 -12.40025 -12.04119 -11.33217 -11.26770 -11.05678 -10.72849 -10.55765 -10.43699 -10.10606 -9.97041 -9.76532 -8.82871 -8.41481 -8.40818 -6.58249 -3.99828 2.30895 3.04838 3.08082 3.10965 3.30177 3.75837 3.96216 4.15838 4.30631 4.40068 4.51483 4.67120 4.84767 5.12967 5.19979 5.20905 5.42897 5.57348 5.58365 5.63814 5.75000 5.84442 5.95284 6.18206 6.68920 7.26890 7.33222 7.67360 7.92823 8.25590 8.52214 8.75403 9.20028 9.62338 10.51863 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.056943 B = 0.004344 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.599588 B = 6444.111398 C = 6809.151871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.052 3.948 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.309 4.309 8 H 0.127 0.873 9 N -0.527 5.527 10 C 0.404 3.596 11 O -0.579 6.579 12 C 0.513 3.487 13 O -0.552 6.552 14 N -0.710 5.710 15 C 0.129 3.871 16 C -0.117 4.117 17 H 0.102 0.898 18 C -0.124 4.124 19 C 0.077 3.923 20 H 0.068 0.932 21 O -0.552 6.552 22 C -0.168 4.168 23 H 0.281 0.719 24 H 0.384 0.616 25 H 0.411 0.589 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.381 0.619 31 H 0.076 0.924 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.984 -8.207 2.353 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.439 4.439 8 H 0.145 0.855 9 N -0.164 5.164 10 C 0.189 3.811 11 O -0.465 6.465 12 C 0.297 3.703 13 O -0.430 6.430 14 N -0.364 5.364 15 C 0.005 3.995 16 C -0.135 4.135 17 H 0.120 0.880 18 C -0.162 4.162 19 C 0.018 3.982 20 H 0.085 0.915 21 O -0.357 6.357 22 C -0.205 4.205 23 H 0.092 0.908 24 H 0.218 0.782 25 H 0.247 0.753 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.228 0.772 31 H 0.094 0.906 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.835 -7.665 1.801 19.496 hybrid contribution 0.266 0.633 0.549 0.879 sum 18.101 -7.032 2.350 19.561 Atomic orbital electron populations 1.69445 1.06117 1.28626 1.44518 1.25232 0.95547 0.98588 0.96210 0.86671 0.80414 0.83031 0.79800 1.18890 1.19539 1.18442 1.19564 0.79151 0.97084 1.48067 0.85511 1.41827 1.07565 1.06940 1.60105 1.18860 0.86480 0.85273 0.90506 1.90623 1.68804 1.30362 1.56758 1.20627 0.89827 0.83602 0.76253 1.90672 1.70936 1.31392 1.50003 1.45655 1.06520 1.09387 1.74844 1.21368 0.80088 0.95828 1.02239 1.22743 0.96602 0.95871 0.98311 0.88013 1.23020 0.95769 0.97091 1.00278 1.22694 0.96325 0.83654 0.95561 0.91455 1.86466 1.95736 1.16017 1.37517 1.23745 0.98781 1.00927 0.97079 0.90791 0.78158 0.75272 0.91422 0.91373 0.88447 0.90263 0.77186 0.90573 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.78 13.94 55.53 0.77 -23.00 16 2 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 3 Si 0.88 19.48 27.74 -169.99 -4.72 14.77 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 7 C -0.31 -8.71 10.16 -15.15 -0.15 -8.87 16 8 H 0.13 3.97 7.36 -52.49 -0.39 3.59 16 9 N -0.53 -13.49 5.06 -11.59 -0.06 -13.55 16 10 C 0.40 9.94 7.82 -11.88 -0.09 9.84 16 11 O -0.58 -15.48 16.03 5.36 0.09 -15.39 16 12 C 0.51 10.73 7.87 -11.88 -0.09 10.63 16 13 O -0.55 -12.29 16.47 5.42 0.09 -12.20 16 14 N -0.71 -11.70 5.55 -60.93 -0.34 -12.04 16 15 C 0.13 1.66 5.51 -4.04 -0.02 1.63 16 16 C -0.12 -1.19 3.68 -89.81 -0.33 -1.52 16 17 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.12 -1.05 7.47 -25.92 -0.19 -1.25 16 19 C 0.08 0.62 5.28 -25.91 -0.14 0.48 16 20 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 21 O -0.55 -4.81 13.59 -35.23 -0.48 -5.29 16 22 C -0.17 -1.49 7.47 -25.92 -0.19 -1.69 16 23 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 24 H 0.38 9.23 5.22 -40.82 -0.21 9.01 16 25 H 0.41 6.48 7.93 -40.82 -0.32 6.16 16 26 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.38 1.68 9.12 45.56 0.42 2.10 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.78 7.90 -51.93 -0.41 0.37 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -32.65 282.37 -4.73 -37.37 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -3.03 Total: 14.50 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.31 Total: 10.58 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.38 Total: -48.59 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.30 Total: -32.88 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.72 Total: 14.77 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.65 -4.73 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720938667.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.219 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds