Wall clock time and date at job start Mon Mar 30 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48497 * 109.46961 * 269.99751 * 3 2 1 5 5 H 1.48496 * 109.47612 * 30.00087 * 3 2 1 6 6 H 1.48507 * 109.46767 * 150.00138 * 3 2 1 7 7 C 1.39590 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99430 * 179.97438 * 7 2 1 9 9 N 1.36113 * 120.00379 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00441 * 179.97438 * 9 7 2 11 11 O 1.21505 * 119.99584 * 0.02562 * 10 9 7 12 12 C 1.48827 * 120.00348 * 180.02562 * 10 9 7 13 13 O 1.21445 * 119.99712 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00217 * 179.97438 * 12 10 9 15 15 C 1.46494 * 120.00463 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47391 * 180.02562 * 15 14 12 17 17 H 1.08993 * 112.90825 * 316.25137 * 16 15 14 18 18 C 1.53962 * 113.66529 * 87.55384 * 16 15 14 19 19 C 1.53782 * 87.11063 * 139.88900 * 18 16 15 20 20 H 1.08997 * 113.61225 * 89.18406 * 19 18 16 21 21 O 1.42901 * 113.61110 * 220.08969 * 19 18 16 22 22 C 1.53781 * 87.08260 * 334.63747 * 19 18 16 23 23 H 0.96994 * 119.99868 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99833 * 0.02562 * 9 7 2 25 25 H 0.97000 * 119.99857 * 0.02562 * 14 12 10 26 26 H 1.09002 * 109.47287 * 60.00002 * 15 14 12 27 27 H 1.09004 * 109.47020 * 300.00283 * 15 14 12 28 28 H 1.08997 * 113.53543 * 25.33574 * 18 16 15 29 29 H 1.08998 * 113.73879 * 254.47172 * 18 16 15 30 30 H 0.96705 * 113.99992 * 277.49360 * 21 19 18 31 31 H 1.09002 * 113.61445 * 139.98212 * 22 19 18 32 32 H 1.09002 * 113.61408 * 270.79943 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0463 -1.4001 5 1 1.4417 2.6527 0.7000 6 1 3.5417 1.4401 0.7001 7 6 2.0080 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0001 9 7 1.3274 -2.3877 0.0005 10 6 2.0013 -3.5550 0.0005 11 8 3.2163 -3.5550 0.0010 12 6 1.2571 -4.8439 0.0000 13 8 0.0427 -4.8438 -0.0010 14 7 1.9309 -6.0110 -0.0006 15 6 1.1985 -7.2797 -0.0006 16 6 2.1927 -8.4427 -0.0006 17 1 3.0196 -8.2939 -0.6948 18 6 2.6400 -8.8733 1.4083 19 6 2.5499 -10.3248 0.9085 20 1 3.4747 -10.6915 0.4633 21 8 1.9988 -11.2278 1.8693 22 6 1.5260 -9.8231 -0.1234 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3877 -0.0002 25 1 2.9009 -6.0111 -0.0002 26 1 0.5715 -7.3373 -0.8903 27 1 0.5721 -7.3377 0.8897 28 1 1.9160 -8.6338 2.1870 29 1 3.6531 -8.5608 1.6617 30 1 2.6380 -11.5469 2.5211 31 1 1.6400 -10.2769 -1.1078 32 1 0.4973 -9.8447 0.2362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720946107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:27 Heat of formation + Delta-G solvation = -108.541793 kcal Electronic energy + Delta-G solvation = -16806.641058 eV Core-core repulsion = 13767.735407 eV Total energy + Delta-G solvation = -3038.905651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90464 -39.11088 -37.17452 -35.64809 -34.42548 -33.48682 -31.39066 -28.11003 -25.95736 -25.69676 -23.25908 -21.78650 -20.07115 -19.16337 -18.33958 -17.79425 -16.85165 -15.99151 -15.56122 -15.12231 -15.03590 -14.63425 -14.11263 -13.93918 -13.74171 -12.94363 -12.71464 -12.64371 -12.15949 -11.81235 -11.74192 -11.63229 -11.20071 -11.00758 -10.54190 -10.50258 -10.42846 -10.34257 -10.00614 -9.71922 -8.72180 -8.26825 -8.22441 -6.66968 -3.99339 2.45984 3.15084 3.15817 3.21237 3.40469 3.96214 4.06705 4.27545 4.34294 4.38411 4.59793 4.65367 5.05077 5.12684 5.18875 5.23393 5.53822 5.55503 5.66297 5.72484 5.87427 5.96922 6.06876 6.21732 6.79459 7.31033 7.39048 7.69583 7.88618 8.33286 8.63477 8.96379 9.32145 9.85350 10.47954 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.066946 B = 0.003930 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.146123 B = 7123.678617 C = 7341.240715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.394 3.606 11 O -0.599 6.599 12 C 0.512 3.488 13 O -0.547 6.547 14 N -0.714 5.714 15 C 0.133 3.867 16 C -0.123 4.123 17 H 0.101 0.899 18 C -0.164 4.164 19 C 0.074 3.926 20 H 0.082 0.918 21 O -0.561 6.561 22 C -0.119 4.119 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.377 0.623 31 H 0.076 0.924 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.133 -15.975 1.120 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.488 6.488 12 C 0.296 3.704 13 O -0.424 6.424 14 N -0.368 5.368 15 C 0.009 3.991 16 C -0.141 4.141 17 H 0.119 0.881 18 C -0.202 4.202 19 C 0.015 3.985 20 H 0.100 0.900 21 O -0.367 6.367 22 C -0.157 4.157 23 H 0.091 0.909 24 H 0.240 0.760 25 H 0.245 0.755 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.224 0.776 31 H 0.095 0.905 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.323 -15.715 0.777 16.081 hybrid contribution 0.754 0.693 0.288 1.064 sum 4.076 -15.022 1.065 15.601 Atomic orbital electron populations 1.69484 1.06528 1.29364 1.45301 1.25594 0.95631 1.00485 0.95907 0.85715 0.79365 0.79657 0.78779 1.19899 1.20516 1.18898 1.19884 0.93979 0.81901 1.47942 0.86979 1.41565 1.10502 1.04235 1.57012 1.18971 0.87815 0.84248 0.91155 1.90574 1.12901 1.86660 1.58629 1.20686 0.87500 0.85941 0.76224 1.90691 1.14085 1.88148 1.49516 1.45649 1.11081 1.04637 1.75446 1.21262 0.93907 0.81538 1.02392 1.22603 0.99226 0.94010 0.98295 0.88104 1.23816 1.02644 0.96471 0.97287 1.23355 0.96715 0.87943 0.90445 0.90048 1.86532 1.40595 1.64922 1.44602 1.23038 0.99893 0.94153 0.98572 0.90909 0.75988 0.75505 0.91348 0.91371 0.88943 0.90946 0.77611 0.90548 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.39 13.03 55.53 0.72 -22.67 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.10 29.56 -169.99 -5.02 15.08 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.31 -8.49 9.67 -15.15 -0.15 -8.64 16 8 H 0.11 3.16 7.15 -52.48 -0.38 2.79 16 9 N -0.50 -13.47 5.25 -11.59 -0.06 -13.53 16 10 C 0.39 10.01 7.82 -11.88 -0.09 9.91 16 11 O -0.60 -16.09 16.03 5.36 0.09 -16.00 16 12 C 0.51 11.26 7.87 -11.88 -0.09 11.16 16 13 O -0.55 -13.05 16.47 5.41 0.09 -12.96 16 14 N -0.71 -12.18 5.55 -60.93 -0.34 -12.51 16 15 C 0.13 1.81 5.51 -4.05 -0.02 1.79 16 16 C -0.12 -1.23 3.76 -89.71 -0.34 -1.57 16 17 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.16 -1.56 7.47 -25.82 -0.19 -1.75 16 19 C 0.07 0.63 5.22 -25.92 -0.14 0.50 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 21 O -0.56 -5.15 13.67 -35.23 -0.48 -5.63 16 22 C -0.12 -1.08 7.47 -25.92 -0.19 -1.28 16 23 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 24 H 0.40 11.02 7.35 -40.82 -0.30 10.72 16 25 H 0.41 6.52 7.93 -40.82 -0.32 6.20 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 28 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.38 1.83 9.12 45.56 0.42 2.24 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.94 8.10 -51.93 -0.42 0.51 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -32.20 285.57 -5.08 -37.28 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -3.07 Total: 15.81 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -1.31 Total: 10.83 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.32 Total: -48.71 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.31 Total: -34.59 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.20 -5.08 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720946107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.265 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds