Wall clock time and date at job start Mon Mar 30 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48497 * 109.46961 * 269.99751 * 3 2 1 5 5 H 1.48496 * 109.47612 * 30.00087 * 3 2 1 6 6 H 1.48507 * 109.46767 * 150.00138 * 3 2 1 7 7 C 1.39590 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99430 * 179.97438 * 7 2 1 9 9 N 1.36113 * 120.00379 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00441 * 179.97438 * 9 7 2 11 11 O 1.21505 * 119.99584 * 0.02562 * 10 9 7 12 12 C 1.48827 * 120.00348 * 180.02562 * 10 9 7 13 13 O 1.21445 * 119.99712 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00217 * 179.97438 * 12 10 9 15 15 C 1.46494 * 120.00463 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47391 * 180.02562 * 15 14 12 17 17 H 1.08993 * 112.90825 * 316.25137 * 16 15 14 18 18 C 1.53962 * 113.66529 * 87.55384 * 16 15 14 19 19 C 1.53782 * 87.11063 * 139.88900 * 18 16 15 20 20 H 1.08997 * 113.61225 * 89.18406 * 19 18 16 21 21 O 1.42901 * 113.61110 * 220.08969 * 19 18 16 22 22 C 1.53781 * 87.08260 * 334.63747 * 19 18 16 23 23 H 0.96994 * 119.99868 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99833 * 0.02562 * 9 7 2 25 25 H 0.97000 * 119.99857 * 0.02562 * 14 12 10 26 26 H 1.09002 * 109.47287 * 60.00002 * 15 14 12 27 27 H 1.09004 * 109.47020 * 300.00283 * 15 14 12 28 28 H 1.08997 * 113.53543 * 25.33574 * 18 16 15 29 29 H 1.08998 * 113.73879 * 254.47172 * 18 16 15 30 30 H 0.96705 * 113.99992 * 277.49360 * 21 19 18 31 31 H 1.09002 * 113.61445 * 139.98212 * 22 19 18 32 32 H 1.09002 * 113.61408 * 270.79943 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0463 -1.4001 5 1 1.4417 2.6527 0.7000 6 1 3.5417 1.4401 0.7001 7 6 2.0080 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0001 9 7 1.3274 -2.3877 0.0005 10 6 2.0013 -3.5550 0.0005 11 8 3.2163 -3.5550 0.0010 12 6 1.2571 -4.8439 0.0000 13 8 0.0427 -4.8438 -0.0010 14 7 1.9309 -6.0110 -0.0006 15 6 1.1985 -7.2797 -0.0006 16 6 2.1927 -8.4427 -0.0006 17 1 3.0196 -8.2939 -0.6948 18 6 2.6400 -8.8733 1.4083 19 6 2.5499 -10.3248 0.9085 20 1 3.4747 -10.6915 0.4633 21 8 1.9988 -11.2278 1.8693 22 6 1.5260 -9.8231 -0.1234 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3877 -0.0002 25 1 2.9009 -6.0111 -0.0002 26 1 0.5715 -7.3373 -0.8903 27 1 0.5721 -7.3377 0.8897 28 1 1.9160 -8.6338 2.1870 29 1 3.6531 -8.5608 1.6617 30 1 2.6380 -11.5469 2.5211 31 1 1.6400 -10.2769 -1.1078 32 1 0.4973 -9.8447 0.2362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720946107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:27 Heat of formation + Delta-G solvation = -135.885467 kcal Electronic energy + Delta-G solvation = -16807.826768 eV Core-core repulsion = 13767.735407 eV Total energy + Delta-G solvation = -3040.091362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36754 -40.28941 -39.05169 -36.73545 -36.22602 -34.91350 -33.43947 -29.40531 -27.62169 -26.66965 -24.76736 -23.02169 -21.40325 -20.54315 -20.19601 -18.97044 -18.19668 -17.65090 -16.85924 -16.76939 -16.27611 -16.14490 -15.72439 -15.32878 -15.05089 -14.55570 -14.35870 -13.67634 -13.48184 -13.39337 -12.96715 -12.65829 -12.58182 -12.47357 -12.19953 -12.10031 -11.82105 -11.66745 -11.26127 -10.70880 -10.28668 -10.23987 -10.19284 -8.66394 -6.11511 0.59471 1.41321 1.47476 1.56278 1.82366 2.29515 2.36916 3.14966 3.23466 3.33191 3.56614 3.64957 3.84262 3.99505 4.04218 4.25804 4.37600 4.64293 4.80358 4.83845 4.86044 5.04175 5.16219 5.24744 5.30368 5.47543 5.67436 6.15808 6.38876 6.81123 6.94413 7.01806 7.27366 7.79101 8.49518 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.066946 B = 0.003930 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.146123 B = 7123.678617 C = 7341.240715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.616 6.616 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.690 5.690 15 C 0.130 3.870 16 C -0.116 4.116 17 H 0.117 0.883 18 C -0.167 4.167 19 C 0.082 3.918 20 H 0.107 0.893 21 O -0.581 6.581 22 C -0.120 4.120 23 H 0.289 0.711 24 H 0.400 0.600 25 H 0.417 0.583 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.395 0.605 31 H 0.093 0.907 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -16.673 0.931 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.118 0.882 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.506 6.506 12 C 0.299 3.701 13 O -0.449 6.449 14 N -0.343 5.343 15 C 0.007 3.993 16 C -0.135 4.135 17 H 0.136 0.864 18 C -0.205 4.205 19 C 0.024 3.976 20 H 0.125 0.875 21 O -0.389 6.389 22 C -0.158 4.158 23 H 0.099 0.901 24 H 0.235 0.765 25 H 0.254 0.746 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.245 0.755 31 H 0.111 0.889 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.368 -16.464 0.598 17.044 hybrid contribution 0.425 0.784 0.368 0.965 sum 4.793 -15.680 0.966 16.425 Atomic orbital electron populations 1.69552 1.07879 1.30847 1.45123 1.26569 0.96508 1.03545 0.94340 0.84676 0.77997 0.74916 0.79210 1.18916 1.19154 1.18704 1.20001 0.93731 0.83067 1.50806 0.88230 1.41665 1.10239 1.04838 1.57733 1.19618 0.87883 0.85238 0.89860 1.90540 1.13731 1.87293 1.59054 1.20105 0.87002 0.86081 0.76901 1.90683 1.14712 1.88375 1.51134 1.45620 1.11537 1.04386 1.72759 1.21526 0.94790 0.80916 1.02083 1.22597 0.98854 0.92758 0.99304 0.86449 1.23818 1.02623 0.97671 0.96384 1.23364 0.97186 0.87174 0.89926 0.87540 1.86486 1.42101 1.64959 1.45380 1.23050 0.99458 0.93425 0.99846 0.90081 0.76514 0.74592 0.91305 0.92047 0.90579 0.90041 0.75516 0.88889 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.46 13.03 21.77 0.28 -48.18 16 2 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 3 Si 1.01 40.75 29.56 68.60 2.03 42.77 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.35 -19.58 9.67 84.36 0.82 -18.76 16 8 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 9 N -0.51 -28.32 5.25 -308.86 -1.62 -29.94 16 10 C 0.39 20.10 7.82 87.08 0.68 20.78 16 11 O -0.62 -33.44 16.03 -3.73 -0.06 -33.50 16 12 C 0.52 22.79 7.87 87.08 0.69 23.47 16 13 O -0.57 -27.43 16.47 -3.54 -0.06 -27.49 16 14 N -0.69 -22.98 5.55 -465.02 -2.58 -25.56 16 15 C 0.13 3.40 5.51 86.38 0.48 3.88 16 16 C -0.12 -2.09 3.76 -10.20 -0.04 -2.13 16 17 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 18 C -0.17 -2.85 7.47 31.18 0.23 -2.62 16 19 C 0.08 1.17 5.22 31.12 0.16 1.34 16 20 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 21 O -0.58 -9.43 13.67 -148.98 -2.04 -11.47 16 22 C -0.12 -1.92 7.47 31.12 0.23 -1.69 16 23 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 24 H 0.40 22.49 7.35 -92.71 -0.68 21.81 16 25 H 0.42 12.75 7.93 -92.71 -0.74 12.01 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.73 7.84 -2.38 -0.02 1.72 16 28 H 0.08 1.56 7.90 -2.39 -0.02 1.54 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.39 2.94 9.12 -74.05 -0.68 2.26 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.52 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -69.25 285.57 -1.24 -70.49 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.92 Total: 38.40 kcal Atomic # 6 Polarization: 20.75 SS G_CDS: 3.72 Total: 24.46 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.92 Total: -103.68 kcal Atomic # 8 Polarization: -70.30 SS G_CDS: -2.15 Total: -72.45 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -69.25 -1.24 -70.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720946107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.392 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds