Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36760 * 127.14590 * 2 1 4 4 C 1.50699 * 126.33793 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47025 * 269.97073 * 4 3 2 6 6 N 1.46894 * 109.47303 * 179.97438 * 5 4 3 7 7 N 1.30290 * 107.32121 * 179.97438 * 3 2 1 8 8 N 1.28524 * 110.08135 * 0.02562 * 7 3 2 9 9 C 1.31284 * 109.85398 * 359.97438 * 8 7 3 10 10 S 1.76209 * 126.48497 * 179.74060 * 9 8 7 11 11 C 1.80998 * 99.99789 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47289 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99695 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00075 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00377 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99944 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46888 * 90.00542 * 16 14 12 18 18 H 1.48494 * 109.47330 * 210.00544 * 16 14 12 19 19 H 1.48493 * 109.47295 * 330.00755 * 16 14 12 20 20 H 1.08989 * 109.46908 * 270.02225 * 1 2 3 21 21 H 1.08999 * 109.46678 * 30.02175 * 1 2 3 22 22 H 1.09000 * 109.46673 * 150.01731 * 1 2 3 23 23 H 1.09000 * 109.47602 * 29.96895 * 4 3 2 24 24 H 1.09000 * 109.47525 * 149.97460 * 4 3 2 25 25 H 1.09005 * 109.47225 * 300.00478 * 5 4 3 26 26 H 1.09005 * 109.47094 * 59.99695 * 5 4 3 27 27 H 1.00905 * 111.00354 * 179.97438 * 6 5 4 28 28 H 1.00895 * 111.00357 * 303.95398 * 6 5 4 29 29 H 1.08998 * 109.47424 * 300.00146 * 11 10 9 30 30 H 1.09005 * 109.47255 * 59.99890 * 11 10 9 31 31 H 0.97001 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2908 1.0901 0.0000 4 6 1.8624 2.5349 0.0005 5 6 1.7176 3.0245 -1.4418 6 7 1.2994 4.4326 -1.4413 7 7 3.5165 0.6482 0.0006 8 7 3.5223 -0.6370 0.0004 9 6 2.2895 -1.0884 0.0002 10 16 1.7927 -2.7790 -0.0065 11 6 3.4143 -3.5830 -0.0116 12 6 3.2333 -5.0791 -0.0172 13 1 2.2398 -5.5028 -0.0180 14 6 4.3358 -5.9069 -0.0223 15 7 5.5455 -5.3910 -0.0219 16 14 4.1113 -7.7614 -0.0300 17 1 4.0500 -8.2467 -1.4320 18 1 5.2565 -8.4015 0.6658 19 1 2.8491 -8.1101 0.6702 20 1 -0.3633 0.0004 1.0276 21 1 -0.3632 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 0.9058 2.6301 0.5142 24 1 2.6123 3.1361 0.5147 25 1 2.6743 2.9293 -1.9556 26 1 0.9677 2.4232 -1.9560 27 1 1.1972 4.7798 -2.3832 28 1 0.4474 4.5566 -0.9154 29 1 3.9672 -3.2802 -0.9009 30 1 3.9691 -3.2878 0.8790 31 1 6.3212 -5.9734 -0.0251 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720985730.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = 63.259034 kcal Electronic energy + Delta-G solvation = -14738.212722 eV Core-core repulsion = 12181.802536 eV Total energy + Delta-G solvation = -2556.410186 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.49561 -36.01358 -34.65751 -33.19153 -31.57797 -28.76130 -28.01020 -27.31626 -23.39620 -22.80747 -22.22574 -20.45150 -17.56096 -16.55328 -16.27969 -16.05882 -15.72075 -15.26520 -14.67002 -14.25930 -13.56306 -13.38284 -13.16542 -12.62889 -12.48657 -12.39546 -12.19130 -11.60406 -11.24495 -10.92896 -10.83476 -10.53014 -10.05643 -9.96553 -9.67469 -9.41944 -9.24210 -9.06754 -8.61388 -6.89586 -6.20230 -4.29033 1.81829 1.96187 2.87364 3.19671 3.24724 3.30435 3.32345 3.46830 4.06543 4.32185 4.56717 4.70017 4.72849 4.85422 5.02769 5.15888 5.17313 5.28235 5.45855 5.76929 5.82579 6.06688 6.32321 6.71500 6.97165 7.06614 7.11387 7.22545 7.66793 7.92092 8.71651 9.07087 9.34583 10.90078 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.058177 B = 0.004726 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.176882 B = 5922.793481 C = 6244.259002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.474 5.474 3 C 0.158 3.842 4 C -0.022 4.022 5 C 0.067 3.933 6 N -0.849 5.849 7 N -0.281 5.281 8 N -0.290 5.290 9 C 0.179 3.821 10 S -0.059 6.059 11 C 0.080 3.920 12 C -0.528 4.528 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.880 5.880 16 Si 0.908 3.092 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 H 0.080 0.920 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.026 0.974 27 H 0.346 0.654 28 H 0.339 0.661 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 13.943 -1.474 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.170 5.170 3 C -0.113 4.113 4 C -0.062 4.062 5 C -0.065 4.065 6 N -0.379 5.379 7 N -0.121 5.121 8 N -0.134 5.134 9 C -0.195 4.195 10 S 0.170 5.830 11 C -0.067 4.067 12 C -0.568 4.568 13 H 0.085 0.915 14 C -0.135 4.135 15 N -0.517 5.517 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.195 1.195 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.113 0.887 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.101 0.899 26 H 0.044 0.956 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.637 13.555 -1.097 17.899 hybrid contribution -1.106 -0.782 -0.491 1.441 sum -12.743 12.773 -1.588 18.112 Atomic orbital electron populations 1.22008 0.75866 1.04763 1.03940 1.46333 1.08251 1.05307 1.57103 1.24706 0.87381 0.91420 1.07745 1.19844 1.02667 0.85851 0.97875 1.21744 1.01136 0.87917 0.95726 1.58636 1.40070 1.18746 1.20410 1.73936 1.17196 1.03896 1.17104 1.74853 1.15858 1.02029 1.20644 1.27444 0.89630 0.96841 1.05572 1.85383 1.21340 0.84873 1.91384 1.21337 0.85825 0.96989 1.02592 1.20580 0.93560 0.88291 1.54342 0.91485 1.24942 0.94683 0.99454 0.94373 1.69985 0.97811 1.35830 1.48077 0.86338 0.78023 0.83802 0.78385 1.20270 1.20840 1.19543 0.90126 0.89707 0.88746 0.90512 0.87616 0.89890 0.95585 0.84171 0.84884 0.92889 0.92844 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.79 59.85 0.65 1.44 16 2 N -0.47 -7.60 3.21 -120.91 -0.39 -7.99 16 3 C 0.16 2.54 7.32 -154.00 -1.13 1.41 16 4 C -0.02 -0.24 5.69 -27.88 -0.16 -0.40 16 5 C 0.07 0.64 6.77 -3.83 -0.03 0.62 16 6 N -0.85 -6.34 9.62 -10.37 -0.10 -6.44 16 7 N -0.28 -5.86 12.17 32.99 0.40 -5.46 16 8 N -0.29 -6.82 11.60 30.68 0.36 -6.47 16 9 C 0.18 3.70 8.07 -88.34 -0.71 2.99 16 10 S -0.06 -1.24 21.72 -107.50 -2.34 -3.58 16 11 C 0.08 2.12 4.99 36.01 0.18 2.30 16 12 C -0.53 -14.59 9.13 -34.44 -0.31 -14.91 16 13 H 0.07 1.79 7.71 -52.48 -0.40 1.38 16 14 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 15 N -0.88 -25.92 13.29 55.43 0.74 -25.19 16 16 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H 0.08 0.71 8.14 -51.94 -0.42 0.28 16 21 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 22 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 23 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 24 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.35 2.07 9.08 -39.29 -0.36 1.71 16 28 H 0.34 1.89 8.99 -39.29 -0.35 1.53 16 29 H 0.05 1.52 8.14 -51.92 -0.42 1.09 16 30 H 0.05 1.53 8.14 -51.91 -0.42 1.11 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 287.29 15.07 4.33 4.33 Total: -1.00 -33.25 287.29 -7.65 -40.89 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.01 Total: -1.42 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.61 Total: -4.65 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 1.01 Total: -51.54 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.34 Total: -3.58 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.25 -7.65 -40.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720985730.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.154 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds