Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36760 * 127.14590 * 2 1 4 4 C 1.50699 * 126.33793 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47025 * 269.97073 * 4 3 2 6 6 N 1.46894 * 109.47303 * 179.97438 * 5 4 3 7 7 N 1.30290 * 107.32121 * 179.97438 * 3 2 1 8 8 N 1.28524 * 110.08135 * 0.02562 * 7 3 2 9 9 C 1.31284 * 109.85398 * 359.97438 * 8 7 3 10 10 S 1.76209 * 126.48497 * 179.74060 * 9 8 7 11 11 C 1.80998 * 99.99789 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47289 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99695 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00075 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00377 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99944 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46888 * 90.00542 * 16 14 12 18 18 H 1.48494 * 109.47330 * 210.00544 * 16 14 12 19 19 H 1.48493 * 109.47295 * 330.00755 * 16 14 12 20 20 H 1.08989 * 109.46908 * 270.02225 * 1 2 3 21 21 H 1.08999 * 109.46678 * 30.02175 * 1 2 3 22 22 H 1.09000 * 109.46673 * 150.01731 * 1 2 3 23 23 H 1.09000 * 109.47602 * 29.96895 * 4 3 2 24 24 H 1.09000 * 109.47525 * 149.97460 * 4 3 2 25 25 H 1.09005 * 109.47225 * 300.00478 * 5 4 3 26 26 H 1.09005 * 109.47094 * 59.99695 * 5 4 3 27 27 H 1.00905 * 111.00354 * 179.97438 * 6 5 4 28 28 H 1.00895 * 111.00357 * 303.95398 * 6 5 4 29 29 H 1.08998 * 109.47424 * 300.00146 * 11 10 9 30 30 H 1.09005 * 109.47255 * 59.99890 * 11 10 9 31 31 H 0.97001 * 120.00022 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2908 1.0901 0.0000 4 6 1.8624 2.5349 0.0005 5 6 1.7176 3.0245 -1.4418 6 7 1.2994 4.4326 -1.4413 7 7 3.5165 0.6482 0.0006 8 7 3.5223 -0.6370 0.0004 9 6 2.2895 -1.0884 0.0002 10 16 1.7927 -2.7790 -0.0065 11 6 3.4143 -3.5830 -0.0116 12 6 3.2333 -5.0791 -0.0172 13 1 2.2398 -5.5028 -0.0180 14 6 4.3358 -5.9069 -0.0223 15 7 5.5455 -5.3910 -0.0219 16 14 4.1113 -7.7614 -0.0300 17 1 4.0500 -8.2467 -1.4320 18 1 5.2565 -8.4015 0.6658 19 1 2.8491 -8.1101 0.6702 20 1 -0.3633 0.0004 1.0276 21 1 -0.3632 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 0.9058 2.6301 0.5142 24 1 2.6123 3.1361 0.5147 25 1 2.6743 2.9293 -1.9556 26 1 0.9677 2.4232 -1.9560 27 1 1.1972 4.7798 -2.3832 28 1 0.4474 4.5566 -0.9154 29 1 3.9672 -3.2802 -0.9009 30 1 3.9691 -3.2878 0.8790 31 1 6.3212 -5.9734 -0.0251 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720985730.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = 39.021755 kcal Electronic energy + Delta-G solvation = -14739.263730 eV Core-core repulsion = 12181.802536 eV Total energy + Delta-G solvation = -2557.461193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.93752 -36.89333 -35.87364 -35.31514 -32.71936 -30.81589 -29.26743 -28.35543 -25.35414 -23.86091 -23.75365 -21.65453 -19.13153 -18.27359 -17.53444 -17.44500 -16.78543 -16.65282 -16.08538 -15.14219 -15.03091 -14.60473 -14.48356 -14.35874 -14.18652 -13.60972 -13.20833 -12.86071 -12.74560 -12.63394 -12.45944 -12.29660 -11.68838 -11.61589 -11.30428 -11.11944 -10.93484 -10.68401 -9.67129 -8.59712 -8.32897 -6.51592 0.20814 0.57402 1.39923 1.42980 1.44850 1.57161 1.68740 1.72771 2.36884 3.01570 3.15035 3.63149 3.83349 3.92327 4.05067 4.23889 4.29166 4.40045 4.53866 4.68188 4.87574 4.88586 4.99479 5.01065 5.01319 5.51825 5.77776 5.79202 6.14896 6.57768 6.61066 7.18420 7.58301 8.79402 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.058177 B = 0.004726 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.176882 B = 5922.793481 C = 6244.259002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.463 5.463 3 C 0.187 3.813 4 C -0.018 4.018 5 C 0.075 3.925 6 N -0.850 5.850 7 N -0.333 5.333 8 N -0.343 5.343 9 C 0.152 3.848 10 S -0.003 6.003 11 C 0.078 3.922 12 C -0.545 4.545 13 H 0.078 0.922 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.985 3.015 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.256 1.256 20 H 0.103 0.897 21 H 0.126 0.874 22 H 0.095 0.905 23 H 0.118 0.882 24 H 0.103 0.897 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.356 0.644 28 H 0.354 0.646 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.052 14.637 -1.461 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.158 5.158 3 C -0.084 4.084 4 C -0.058 4.058 5 C -0.057 4.057 6 N -0.383 5.383 7 N -0.173 5.173 8 N -0.187 5.187 9 C -0.224 4.224 10 S 0.226 5.774 11 C -0.071 4.071 12 C -0.584 4.584 13 H 0.096 0.904 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.807 3.193 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.180 1.180 20 H 0.122 0.878 21 H 0.145 0.855 22 H 0.114 0.886 23 H 0.136 0.864 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.170 0.830 28 H 0.168 0.832 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.783 14.285 -1.087 20.586 hybrid contribution -0.230 -0.761 -0.496 0.937 sum -15.013 13.523 -1.584 20.268 Atomic orbital electron populations 1.22566 0.72114 1.06994 1.06174 1.46624 1.10222 1.03558 1.55363 1.25652 0.86197 0.93303 1.03268 1.20116 1.04478 0.81950 0.99300 1.21521 1.00342 0.89457 0.94381 1.58543 1.41175 1.17035 1.21525 1.73830 1.20210 1.03017 1.20217 1.74732 1.18111 1.03741 1.22106 1.27280 0.90214 0.97615 1.07256 1.84696 1.15934 0.84799 1.92002 1.20897 0.89161 0.97889 0.99105 1.20973 0.94250 0.88922 1.54303 0.90415 1.26047 0.94127 1.05172 0.93400 1.70139 0.98944 1.38022 1.49061 0.85157 0.78495 0.76765 0.78890 1.19244 1.20431 1.18010 0.87836 0.85532 0.88606 0.86421 0.87841 0.92526 0.94529 0.83022 0.83201 0.96537 0.96513 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 10.79 127.77 1.38 2.41 16 2 N -0.46 -14.04 3.21 -536.44 -1.72 -15.77 16 3 C 0.19 5.79 7.32 137.63 1.01 6.80 16 4 C -0.02 -0.34 5.69 29.85 0.17 -0.17 16 5 C 0.08 1.25 6.77 86.30 0.58 1.83 16 6 N -0.85 -9.93 9.62 -186.72 -1.80 -11.73 16 7 N -0.33 -14.26 12.17 -49.53 -0.60 -14.86 16 8 N -0.34 -16.88 11.60 -56.85 -0.66 -17.54 16 9 C 0.15 6.39 8.07 179.55 1.45 7.84 16 10 S 0.00 -0.13 21.72 -56.49 -1.23 -1.36 16 11 C 0.08 4.36 4.99 71.24 0.36 4.72 16 12 C -0.55 -30.85 9.13 25.60 0.23 -30.62 16 13 H 0.08 4.13 7.71 -2.91 -0.02 4.10 16 14 C 0.01 0.81 5.46 84.65 0.46 1.27 16 15 N -0.92 -56.47 13.29 21.44 0.28 -56.18 16 16 Si 0.98 43.13 29.54 68.60 2.03 45.16 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.13 1.09 7.88 -2.39 -0.02 1.08 16 22 H 0.10 1.64 7.85 -2.39 -0.02 1.62 16 23 H 0.12 1.29 7.92 -2.39 -0.02 1.27 16 24 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.36 3.22 9.08 -89.69 -0.81 2.40 16 28 H 0.35 2.44 8.99 -89.70 -0.81 1.63 16 29 H 0.02 1.01 8.14 -2.40 -0.02 0.99 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -77.44 287.29 1.47 -75.97 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -0.47 Total: 2.23 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.64 Total: -5.92 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.50 Total: -116.08 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.23 Total: -1.36 kcal Total: -77.44 1.47 -75.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720985730.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.987 kcal (2) G-P(sol) polarization free energy of solvation -77.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds