Wall clock time and date at job start Mon Mar 30 2020 03:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99917 * 2 1 4 4 H 1.08996 * 112.90794 * 341.25026 * 3 2 1 5 5 C 1.53781 * 113.61388 * 112.50110 * 3 2 1 6 6 C 1.53953 * 87.11172 * 139.90687 * 5 3 2 7 7 C 1.53774 * 87.02144 * 334.63920 * 6 5 3 8 8 H 1.09000 * 113.61535 * 270.76922 * 7 6 5 9 9 N 1.46498 * 113.61904 * 139.94734 * 7 6 5 10 10 C 1.34783 * 119.99904 * 105.86533 * 9 7 6 11 11 O 1.21443 * 119.99839 * 359.97438 * 10 9 7 12 12 C 1.48835 * 119.99942 * 180.02562 * 10 9 7 13 13 O 1.21493 * 119.99715 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99725 * 179.97438 * 12 10 9 15 15 C 1.36116 * 119.99752 * 179.97438 * 14 12 10 16 16 H 1.08002 * 120.00334 * 0.02562 * 15 14 12 17 17 C 1.39584 * 119.99895 * 179.71850 * 15 14 12 18 18 N 1.31014 * 120.00291 * 0.28142 * 17 15 14 19 19 Si 1.86803 * 119.99975 * 180.27534 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00572 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00429 * 19 17 15 22 22 H 1.48490 * 109.47426 * 330.00490 * 19 17 15 23 23 H 1.09005 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46946 * 299.99963 * 1 2 3 25 25 H 1.08996 * 109.46829 * 60.00408 * 1 2 3 26 26 H 1.09001 * 113.61664 * 254.52464 * 5 3 2 27 27 H 1.09005 * 113.61810 * 25.43482 * 5 3 2 28 28 H 1.08995 * 113.67439 * 220.10840 * 6 5 3 29 29 H 1.09004 * 113.61418 * 89.15756 * 6 5 3 30 30 H 0.97000 * 120.00381 * 285.86316 * 9 7 6 31 31 H 0.97000 * 119.99932 * 359.97438 * 14 12 10 32 32 H 0.96996 * 120.00539 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7534 1.6489 1.3018 6 6 3.8253 2.3174 0.4218 7 6 3.3756 1.3719 -0.7045 8 1 3.9082 0.4209 -0.7150 9 7 3.3257 2.0105 -2.0220 10 6 4.2745 1.7376 -2.9395 11 8 5.1710 0.9627 -2.6739 12 6 4.2240 2.3869 -4.2779 13 8 3.3273 3.1624 -4.5433 14 7 5.1731 2.1144 -5.1952 15 6 5.1267 2.7077 -6.4193 16 1 4.3296 3.3972 -6.6554 17 6 6.1128 2.4300 -7.3673 18 7 7.0801 1.5941 -7.0809 19 14 6.0534 3.2502 -9.0446 20 1 6.8087 4.5279 -8.9978 21 1 6.6636 2.3514 -10.0571 22 1 4.6409 3.5233 -9.4124 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2141 2.3477 1.9412 27 1 3.1167 0.7740 1.8411 28 1 4.8452 2.1375 0.7618 29 1 3.6265 3.3689 0.2146 30 1 2.6097 2.6297 -2.2340 31 1 5.8892 1.4954 -4.9830 32 1 7.7652 1.4008 -7.7397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724375092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:10 Heat of formation + Delta-G solvation = -97.781087 kcal Electronic energy + Delta-G solvation = -17151.347962 eV Core-core repulsion = 14112.908930 eV Total energy + Delta-G solvation = -3038.439032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09843 -38.83651 -37.11714 -36.09239 -34.34928 -32.75441 -31.36265 -27.17431 -26.32283 -24.93684 -24.51981 -22.34913 -20.12058 -19.36118 -18.32547 -17.17630 -17.08022 -15.87712 -15.53625 -15.26512 -14.88689 -14.63594 -14.46460 -13.87997 -13.24734 -13.09526 -12.83771 -12.51258 -12.25957 -11.80446 -11.76593 -11.53302 -11.24082 -11.18245 -10.56306 -10.51277 -10.41394 -10.33151 -9.71949 -9.70786 -8.73943 -8.26060 -8.22487 -6.66913 -3.99282 2.43878 3.15033 3.15653 3.20648 3.33371 3.80804 4.07825 4.24296 4.39733 4.51161 4.76294 4.82786 5.04241 5.14517 5.20059 5.24353 5.32765 5.52367 5.61561 5.71742 5.89475 5.91518 6.03267 6.19316 6.77884 7.10156 7.31015 7.68923 7.87578 8.33004 8.62861 8.96218 9.31979 9.85221 10.47940 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.046538 B = 0.004644 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.520650 B = 6027.603770 C = 6203.142417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.055 3.945 4 H 0.092 0.908 5 C -0.151 4.151 6 C -0.152 4.152 7 C 0.128 3.872 8 H 0.122 0.878 9 N -0.706 5.706 10 C 0.516 3.484 11 O -0.544 6.544 12 C 0.393 3.607 13 O -0.599 6.599 14 N -0.498 5.498 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.868 5.868 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.409 0.591 31 H 0.405 0.595 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 -0.270 12.911 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.004 4.004 4 H 0.110 0.890 5 C -0.189 4.189 6 C -0.191 4.191 7 C 0.022 3.978 8 H 0.140 0.860 9 N -0.359 5.359 10 C 0.300 3.700 11 O -0.421 6.421 12 C 0.178 3.822 13 O -0.488 6.488 14 N -0.133 5.133 15 C -0.437 4.437 16 H 0.130 0.870 17 C -0.176 4.176 18 N -0.506 5.506 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.245 0.755 31 H 0.240 0.760 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.114 -0.594 12.803 15.169 hybrid contribution -0.107 0.471 -0.734 0.879 sum -8.221 -0.123 12.068 14.603 Atomic orbital electron populations 1.22803 0.81232 1.02767 0.99927 1.87976 1.19640 1.27108 1.94500 1.24310 0.94094 0.85655 0.96332 0.89002 1.23285 0.97866 1.01246 0.96510 1.23248 0.99889 0.99671 0.96282 1.22856 0.95596 0.98075 0.81286 0.86032 1.45646 1.29720 1.47322 1.13183 1.20731 0.81462 0.81418 0.86359 1.90686 1.34993 1.35869 1.80516 1.18955 0.87442 0.89976 0.85847 1.90570 1.37486 1.40673 1.80062 1.41571 1.22736 1.37373 1.11570 1.19885 1.11146 1.24008 0.88644 0.86975 1.25591 0.94787 0.96362 1.00835 1.69483 1.12385 1.31993 1.36763 0.85716 0.79159 0.78780 0.79866 1.19893 1.20504 1.18903 0.89721 0.94145 0.93804 0.90658 0.88910 0.89980 0.89346 0.75544 0.75968 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.83 10.71 -35.23 -0.38 -5.21 16 3 C 0.06 0.65 4.06 -25.92 -0.11 0.54 16 4 H 0.09 0.94 7.84 -51.93 -0.41 0.53 16 5 C -0.15 -1.48 7.92 -25.83 -0.20 -1.69 16 6 C -0.15 -1.77 7.89 -25.83 -0.20 -1.97 16 7 C 0.13 1.86 4.04 -67.12 -0.27 1.59 16 8 H 0.12 2.01 7.50 -51.93 -0.39 1.62 16 9 N -0.71 -12.34 5.35 -53.64 -0.29 -12.63 16 10 C 0.52 11.43 7.87 -11.87 -0.09 11.34 16 11 O -0.54 -13.03 16.09 5.42 0.09 -12.94 16 12 C 0.39 10.03 7.82 -11.87 -0.09 9.94 16 13 O -0.60 -16.13 16.03 5.37 0.09 -16.04 16 14 N -0.50 -13.48 5.25 -11.59 -0.06 -13.54 16 15 C -0.31 -8.49 9.67 -15.15 -0.15 -8.64 16 16 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 17 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 18 N -0.87 -23.39 13.03 55.53 0.72 -22.66 16 19 Si 0.94 20.11 29.56 -169.99 -5.02 15.09 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.41 6.63 8.17 -40.82 -0.33 6.30 16 31 H 0.40 11.04 7.35 -40.82 -0.30 10.74 16 32 H 0.28 6.99 8.30 -40.82 -0.34 6.66 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -31.36 286.27 -4.56 -35.91 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -3.90 Total: 14.51 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -0.12 Total: 13.20 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.38 Total: -48.83 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.20 Total: -34.19 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.36 -4.56 -35.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724375092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.870 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds