Wall clock time and date at job start Mon Mar 30 2020 03:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99917 * 2 1 4 4 H 1.08996 * 112.90794 * 341.25026 * 3 2 1 5 5 C 1.53781 * 113.61388 * 112.50110 * 3 2 1 6 6 C 1.53953 * 87.11172 * 139.90687 * 5 3 2 7 7 C 1.53774 * 87.02144 * 334.63920 * 6 5 3 8 8 H 1.09000 * 113.61535 * 270.76922 * 7 6 5 9 9 N 1.46498 * 113.61904 * 139.94734 * 7 6 5 10 10 C 1.34783 * 119.99904 * 105.86533 * 9 7 6 11 11 O 1.21443 * 119.99839 * 359.97438 * 10 9 7 12 12 C 1.48835 * 119.99942 * 180.02562 * 10 9 7 13 13 O 1.21493 * 119.99715 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99725 * 179.97438 * 12 10 9 15 15 C 1.36116 * 119.99752 * 179.97438 * 14 12 10 16 16 H 1.08002 * 120.00334 * 0.02562 * 15 14 12 17 17 C 1.39584 * 119.99895 * 179.71850 * 15 14 12 18 18 N 1.31014 * 120.00291 * 0.28142 * 17 15 14 19 19 Si 1.86803 * 119.99975 * 180.27534 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00572 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00429 * 19 17 15 22 22 H 1.48490 * 109.47426 * 330.00490 * 19 17 15 23 23 H 1.09005 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46946 * 299.99963 * 1 2 3 25 25 H 1.08996 * 109.46829 * 60.00408 * 1 2 3 26 26 H 1.09001 * 113.61664 * 254.52464 * 5 3 2 27 27 H 1.09005 * 113.61810 * 25.43482 * 5 3 2 28 28 H 1.08995 * 113.67439 * 220.10840 * 6 5 3 29 29 H 1.09004 * 113.61418 * 89.15756 * 6 5 3 30 30 H 0.97000 * 120.00381 * 285.86316 * 9 7 6 31 31 H 0.97000 * 119.99932 * 359.97438 * 14 12 10 32 32 H 0.96996 * 120.00539 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7534 1.6489 1.3018 6 6 3.8253 2.3174 0.4218 7 6 3.3756 1.3719 -0.7045 8 1 3.9082 0.4209 -0.7150 9 7 3.3257 2.0105 -2.0220 10 6 4.2745 1.7376 -2.9395 11 8 5.1710 0.9627 -2.6739 12 6 4.2240 2.3869 -4.2779 13 8 3.3273 3.1624 -4.5433 14 7 5.1731 2.1144 -5.1952 15 6 5.1267 2.7077 -6.4193 16 1 4.3296 3.3972 -6.6554 17 6 6.1128 2.4300 -7.3673 18 7 7.0801 1.5941 -7.0809 19 14 6.0534 3.2502 -9.0446 20 1 6.8087 4.5279 -8.9978 21 1 6.6636 2.3514 -10.0571 22 1 4.6409 3.5233 -9.4124 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2141 2.3477 1.9412 27 1 3.1167 0.7740 1.8411 28 1 4.8452 2.1375 0.7618 29 1 3.6265 3.3689 0.2146 30 1 2.6097 2.6297 -2.2340 31 1 5.8892 1.4954 -4.9830 32 1 7.7652 1.4008 -7.7397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724375092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:10 Heat of formation + Delta-G solvation = -122.786832 kcal Electronic energy + Delta-G solvation = -17152.432292 eV Core-core repulsion = 14112.908930 eV Total energy + Delta-G solvation = -3039.523362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.54846 -40.30688 -38.92884 -37.19003 -36.34760 -34.29583 -33.39680 -28.16294 -27.94493 -26.45663 -25.42994 -23.97868 -21.44218 -20.89770 -20.32076 -18.84859 -18.22310 -17.39736 -17.06732 -16.58734 -16.53616 -16.02224 -15.80340 -15.61490 -14.81591 -14.71607 -14.01523 -13.82471 -13.67413 -13.33160 -12.97173 -12.66575 -12.62116 -12.56658 -12.26291 -12.10448 -12.07501 -11.67288 -11.41812 -10.66289 -10.29167 -10.22622 -10.14653 -8.66779 -6.12067 0.57401 1.41089 1.47271 1.55977 1.79244 2.28554 2.35135 2.86398 3.14077 3.26192 3.46967 3.57370 3.82997 3.87953 4.00808 4.32841 4.54691 4.57342 4.63284 4.82607 4.88847 4.97253 5.03191 5.16711 5.24260 5.39759 5.66751 6.14099 6.25648 6.37483 6.80124 7.00453 7.26298 7.78105 8.49111 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.046538 B = 0.004644 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.520650 B = 6027.603770 C = 6203.142417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.061 3.939 4 H 0.111 0.889 5 C -0.132 4.132 6 C -0.145 4.145 7 C 0.103 3.897 8 H 0.097 0.903 9 N -0.684 5.684 10 C 0.519 3.481 11 O -0.567 6.567 12 C 0.389 3.611 13 O -0.616 6.616 14 N -0.510 5.510 15 C -0.346 4.346 16 H 0.100 0.900 17 C -0.005 4.005 18 N -0.896 5.896 19 Si 1.012 2.988 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.263 1.263 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.416 0.584 31 H 0.400 0.600 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 0.462 13.680 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.002 3.998 4 H 0.129 0.871 5 C -0.170 4.170 6 C -0.184 4.184 7 C -0.001 4.001 8 H 0.115 0.885 9 N -0.336 5.336 10 C 0.303 3.697 11 O -0.447 6.447 12 C 0.174 3.826 13 O -0.506 6.506 14 N -0.144 5.144 15 C -0.476 4.476 16 H 0.118 0.882 17 C -0.209 4.209 18 N -0.534 5.534 19 Si 0.832 3.168 20 H -0.189 1.189 21 H -0.191 1.191 22 H -0.187 1.187 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.124 0.876 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.253 0.747 31 H 0.235 0.765 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.116 0.138 13.617 16.387 hybrid contribution 0.132 0.200 -0.879 0.911 sum -8.984 0.338 12.738 15.591 Atomic orbital electron populations 1.23003 0.79464 1.03844 1.01010 1.87942 1.21657 1.27785 1.94643 1.24362 0.92963 0.85940 0.96538 0.87101 1.23200 0.96517 1.01547 0.95706 1.23246 1.00619 0.99637 0.94907 1.23318 0.98650 0.97929 0.80230 0.88475 1.45628 1.28116 1.46386 1.13430 1.20166 0.82408 0.81292 0.85868 1.90675 1.36246 1.37009 1.80728 1.19588 0.86627 0.89476 0.86927 1.90533 1.37911 1.41343 1.80847 1.41675 1.23072 1.37631 1.12032 1.20004 1.12240 1.25535 0.89812 0.88222 1.26570 0.93634 0.96346 1.04334 1.69552 1.12854 1.32599 1.38359 0.84672 0.79269 0.78067 0.74764 1.18869 1.19128 1.18728 0.88828 0.91954 0.93757 0.87628 0.88793 0.90165 0.88256 0.74652 0.76511 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.85 113.37 1.23 1.61 16 2 O -0.40 -9.69 10.71 -148.98 -1.60 -11.28 16 3 C 0.06 1.28 4.06 31.12 0.13 1.41 16 4 H 0.11 1.92 7.84 -2.39 -0.02 1.90 16 5 C -0.13 -2.17 7.92 31.18 0.25 -1.93 16 6 C -0.15 -3.09 7.89 31.18 0.25 -2.84 16 7 C 0.10 2.92 4.04 45.52 0.18 3.11 16 8 H 0.10 3.27 7.50 -2.39 -0.02 3.25 16 9 N -0.68 -23.64 5.35 -441.95 -2.37 -26.01 16 10 C 0.52 23.41 7.87 87.08 0.69 24.10 16 11 O -0.57 -27.86 16.09 -3.54 -0.06 -27.92 16 12 C 0.39 20.30 7.82 87.08 0.68 20.99 16 13 O -0.62 -33.71 16.03 -3.69 -0.06 -33.77 16 14 N -0.51 -28.51 5.25 -308.88 -1.62 -30.13 16 15 C -0.35 -19.66 9.67 84.35 0.82 -18.84 16 16 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 17 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 18 N -0.90 -48.60 13.03 21.76 0.28 -48.32 16 19 Si 1.01 40.85 29.56 68.60 2.03 42.87 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.42 13.12 8.17 -92.71 -0.76 12.37 16 31 H 0.40 22.68 7.35 -92.71 -0.68 22.00 16 32 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 Total: -1.00 -68.50 286.27 1.02 -67.49 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.28 Total: 39.24 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: 4.68 Total: 27.84 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.70 Total: -104.46 kcal Atomic # 8 Polarization: -71.26 SS G_CDS: -1.71 Total: -72.98 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -68.50 1.02 -67.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724375092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.300 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds