Wall clock time and date at job start Mon Mar 30 2020 03:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 112.85288 * 338.30738 * 3 2 1 5 5 C 1.53782 * 113.61654 * 109.50565 * 3 2 1 6 6 C 1.53780 * 87.08253 * 139.97687 * 5 3 2 7 7 C 1.53773 * 87.08365 * 334.57084 * 6 5 3 8 8 H 1.09004 * 113.61869 * 139.97676 * 7 6 5 9 9 N 1.46504 * 113.61712 * 270.88019 * 7 6 5 10 10 C 1.34771 * 120.00431 * 252.50190 * 9 7 6 11 11 O 1.21441 * 119.99922 * 359.97438 * 10 9 7 12 12 C 1.48830 * 120.00164 * 179.97438 * 10 9 7 13 13 O 1.21499 * 120.00092 * 359.97438 * 12 10 9 14 14 N 1.34773 * 119.99817 * 179.97438 * 12 10 9 15 15 C 1.36129 * 119.99925 * 179.97438 * 14 12 10 16 16 H 1.07995 * 119.99480 * 0.02562 * 15 14 12 17 17 C 1.39579 * 120.00000 * 179.97438 * 15 14 12 18 18 N 1.31019 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47045 * 90.00264 * 19 17 15 21 21 H 1.48498 * 109.46775 * 210.00153 * 19 17 15 22 22 H 1.48494 * 109.46730 * 329.99751 * 19 17 15 23 23 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 24 24 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09000 * 113.61581 * 254.52853 * 5 3 2 27 27 H 1.09005 * 113.61098 * 25.34775 * 5 3 2 28 28 H 1.09010 * 113.61117 * 89.11924 * 6 5 3 29 29 H 1.08997 * 113.61589 * 220.01942 * 6 5 3 30 30 H 0.97005 * 119.99740 * 72.49310 * 9 7 6 31 31 H 0.96997 * 120.00299 * 359.97438 * 14 12 10 32 32 H 0.97003 * 119.99877 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0718 -0.3713 5 6 2.6905 1.6770 1.3282 6 6 3.8009 2.3279 0.4867 7 6 3.4077 1.3577 -0.6397 8 1 3.4175 1.8119 -1.6306 9 7 4.1236 0.0805 -0.5908 10 6 5.0814 -0.1905 -1.4994 11 8 5.3507 0.6240 -2.3590 12 6 5.8090 -1.4878 -1.4494 13 8 5.5399 -2.3025 -0.5891 14 7 6.7665 -1.7589 -2.3583 15 6 7.4324 -2.9453 -2.3122 16 1 7.1931 -3.6694 -1.5475 17 6 8.4236 -3.2263 -3.2539 18 7 8.7135 -2.3480 -4.1819 19 14 9.3369 -4.8546 -3.1910 20 1 8.6173 -5.8579 -4.0161 21 1 10.7118 -4.6718 -3.7217 22 1 9.4077 -5.3284 -1.7855 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.1215 2.3889 1.9261 27 1 3.0259 0.8139 1.9033 28 1 3.6111 3.3744 0.2477 29 1 4.8032 2.1575 0.8795 30 1 3.9083 -0.5702 0.0956 31 1 6.9811 -1.1087 -3.0453 32 1 9.4021 -2.5434 -4.8365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724375095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:18 Heat of formation + Delta-G solvation = -94.382114 kcal Electronic energy + Delta-G solvation = -17313.463084 eV Core-core repulsion = 14275.171443 eV Total energy + Delta-G solvation = -3038.291641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17421 -38.76662 -37.05376 -36.05536 -34.28534 -32.49907 -31.30423 -27.15124 -26.24587 -25.02588 -24.45837 -22.71826 -19.74157 -19.22110 -18.30803 -17.15427 -16.95835 -15.68917 -15.48245 -15.28557 -14.83491 -14.63944 -14.24265 -13.82139 -13.72306 -13.13414 -12.76481 -12.67940 -12.26342 -11.77475 -11.73472 -11.21210 -11.16133 -10.95506 -10.64820 -10.50220 -10.39241 -10.29305 -9.67974 -9.53229 -8.66394 -8.22817 -8.18133 -6.63101 -3.95296 2.48420 3.17580 3.18072 3.23378 3.35908 3.77478 4.10092 4.28325 4.43804 4.55570 4.81672 4.87710 5.10734 5.16630 5.24147 5.25549 5.30056 5.55444 5.63702 5.77068 5.92295 5.96197 6.07327 6.18366 6.81195 7.17262 7.34932 7.75355 7.96484 8.38407 8.68557 9.00636 9.36361 9.89815 10.51953 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.043150 B = 0.004978 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.735945 B = 5623.900047 C = 5892.348283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.053 3.947 4 H 0.096 0.904 5 C -0.157 4.157 6 C -0.155 4.155 7 C 0.129 3.871 8 H 0.103 0.897 9 N -0.686 5.686 10 C 0.516 3.484 11 O -0.549 6.549 12 C 0.397 3.603 13 O -0.595 6.595 14 N -0.501 5.501 15 C -0.305 4.305 16 H 0.112 0.888 17 C 0.031 3.969 18 N -0.870 5.870 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.415 0.585 31 H 0.405 0.595 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 7.857 6.965 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.006 4.006 4 H 0.114 0.886 5 C -0.194 4.194 6 C -0.194 4.194 7 C 0.022 3.978 8 H 0.121 0.879 9 N -0.339 5.339 10 C 0.301 3.699 11 O -0.426 6.426 12 C 0.181 3.819 13 O -0.483 6.483 14 N -0.135 5.135 15 C -0.436 4.436 16 H 0.130 0.870 17 C -0.176 4.176 18 N -0.508 5.508 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.252 0.748 31 H 0.240 0.760 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.676 7.742 6.729 15.542 hybrid contribution 0.190 -0.326 -0.118 0.395 sum -11.486 7.417 6.612 15.187 Atomic orbital electron populations 1.22783 0.81362 1.02841 0.99590 1.88015 1.19444 1.26683 1.94467 1.24275 0.93702 0.85899 0.96711 0.88636 1.23521 0.97744 1.01138 0.97027 1.23236 0.99982 0.98927 0.97275 1.22149 0.89848 0.85809 0.99991 0.87853 1.45115 1.37259 1.18126 1.33381 1.20718 0.80047 0.88416 0.80720 1.90675 1.65847 1.49666 1.36402 1.18931 0.87064 0.88205 0.87706 1.90587 1.69346 1.49344 1.39033 1.41556 1.28969 1.17373 1.25610 1.19881 1.14952 0.94526 1.14222 0.86997 1.25576 0.97233 0.99858 0.94935 1.69490 1.30934 1.35227 1.15193 0.85722 0.78181 0.80448 0.79201 1.19925 1.20557 1.18916 0.94126 0.94237 0.89640 0.91172 0.89015 0.89084 0.89974 0.74789 0.76012 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.86 101.05 1.10 1.39 16 2 O -0.37 -4.91 10.01 -35.23 -0.35 -5.26 16 3 C 0.05 0.61 4.20 -25.92 -0.11 0.50 16 4 H 0.10 0.86 7.89 -51.93 -0.41 0.45 16 5 C -0.16 -1.64 7.79 -25.92 -0.20 -1.84 16 6 C -0.16 -1.79 7.88 -25.92 -0.20 -2.00 16 7 C 0.13 1.87 4.27 -67.12 -0.29 1.58 16 8 H 0.10 1.58 7.47 -51.93 -0.39 1.19 16 9 N -0.69 -12.58 4.97 -53.64 -0.27 -12.84 16 10 C 0.52 11.66 7.87 -11.88 -0.09 11.56 16 11 O -0.55 -13.15 16.07 5.42 0.09 -13.06 16 12 C 0.40 10.32 7.82 -11.88 -0.09 10.22 16 13 O -0.59 -16.46 16.03 5.37 0.09 -16.37 16 14 N -0.50 -13.70 5.25 -11.59 -0.06 -13.76 16 15 C -0.31 -8.56 9.67 -15.14 -0.15 -8.71 16 16 H 0.11 3.20 7.15 -52.49 -0.38 2.83 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.62 13.03 55.53 0.72 -22.90 16 19 Si 0.94 20.34 29.56 -169.99 -5.02 15.31 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.42 7.59 7.80 -40.82 -0.32 7.28 16 31 H 0.40 11.12 7.35 -40.82 -0.30 10.82 16 32 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -31.62 285.04 -4.53 -36.15 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -3.88 Total: 15.00 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -0.13 Total: 13.43 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.40 Total: -49.50 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.18 Total: -34.69 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.62 -4.53 -36.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724375095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.228 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds