Wall clock time and date at job start Mon Mar 30 2020 03:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 112.85288 * 338.30738 * 3 2 1 5 5 C 1.53782 * 113.61654 * 109.50565 * 3 2 1 6 6 C 1.53780 * 87.08253 * 139.97687 * 5 3 2 7 7 C 1.53773 * 87.08365 * 334.57084 * 6 5 3 8 8 H 1.09004 * 113.61869 * 139.97676 * 7 6 5 9 9 N 1.46504 * 113.61712 * 270.88019 * 7 6 5 10 10 C 1.34771 * 120.00431 * 252.50190 * 9 7 6 11 11 O 1.21441 * 119.99922 * 359.97438 * 10 9 7 12 12 C 1.48830 * 120.00164 * 179.97438 * 10 9 7 13 13 O 1.21499 * 120.00092 * 359.97438 * 12 10 9 14 14 N 1.34773 * 119.99817 * 179.97438 * 12 10 9 15 15 C 1.36129 * 119.99925 * 179.97438 * 14 12 10 16 16 H 1.07995 * 119.99480 * 0.02562 * 15 14 12 17 17 C 1.39579 * 120.00000 * 179.97438 * 15 14 12 18 18 N 1.31019 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47045 * 90.00264 * 19 17 15 21 21 H 1.48498 * 109.46775 * 210.00153 * 19 17 15 22 22 H 1.48494 * 109.46730 * 329.99751 * 19 17 15 23 23 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 24 24 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09000 * 113.61581 * 254.52853 * 5 3 2 27 27 H 1.09005 * 113.61098 * 25.34775 * 5 3 2 28 28 H 1.09010 * 113.61117 * 89.11924 * 6 5 3 29 29 H 1.08997 * 113.61589 * 220.01942 * 6 5 3 30 30 H 0.97005 * 119.99740 * 72.49310 * 9 7 6 31 31 H 0.96997 * 120.00299 * 359.97438 * 14 12 10 32 32 H 0.97003 * 119.99877 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0718 -0.3713 5 6 2.6905 1.6770 1.3282 6 6 3.8009 2.3279 0.4867 7 6 3.4077 1.3577 -0.6397 8 1 3.4175 1.8119 -1.6306 9 7 4.1236 0.0805 -0.5908 10 6 5.0814 -0.1905 -1.4994 11 8 5.3507 0.6240 -2.3590 12 6 5.8090 -1.4878 -1.4494 13 8 5.5399 -2.3025 -0.5891 14 7 6.7665 -1.7589 -2.3583 15 6 7.4324 -2.9453 -2.3122 16 1 7.1931 -3.6694 -1.5475 17 6 8.4236 -3.2263 -3.2539 18 7 8.7135 -2.3480 -4.1819 19 14 9.3369 -4.8546 -3.1910 20 1 8.6173 -5.8579 -4.0161 21 1 10.7118 -4.6718 -3.7217 22 1 9.4077 -5.3284 -1.7855 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.1215 2.3889 1.9261 27 1 3.0259 0.8139 1.9033 28 1 3.6111 3.3744 0.2477 29 1 4.8032 2.1575 0.8795 30 1 3.9083 -0.5702 0.0956 31 1 6.9811 -1.1087 -3.0453 32 1 9.4021 -2.5434 -4.8365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724375095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:18 Heat of formation + Delta-G solvation = -119.453125 kcal Electronic energy + Delta-G solvation = -17314.550245 eV Core-core repulsion = 14275.171443 eV Total energy + Delta-G solvation = -3039.378802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.59792 -40.30600 -38.88661 -37.14261 -36.33158 -34.09066 -33.35297 -28.12637 -27.90307 -26.46926 -25.33832 -24.38954 -21.42482 -20.48156 -20.37131 -18.84096 -18.13813 -17.41081 -16.71642 -16.59249 -16.55597 -16.02272 -15.76985 -15.43779 -15.10880 -14.53744 -14.48814 -13.96247 -13.67293 -13.29741 -12.96905 -12.69259 -12.58407 -12.33107 -12.09983 -12.07736 -11.86100 -11.66956 -11.54613 -10.42955 -10.28196 -10.25387 -10.12129 -8.66121 -6.11273 0.58722 1.41174 1.47458 1.56098 1.78885 2.29145 2.35859 2.84950 3.14678 3.29915 3.49139 3.62120 3.87754 4.01733 4.02892 4.38096 4.52256 4.59787 4.64805 4.85682 4.91429 4.98090 5.06545 5.17870 5.24944 5.43140 5.67929 6.16948 6.31290 6.39607 6.81623 7.02242 7.27420 7.79618 8.49857 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.043150 B = 0.004978 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.735945 B = 5623.900047 C = 5892.348283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.063 3.937 4 H 0.130 0.870 5 C -0.146 4.146 6 C -0.145 4.145 7 C 0.099 3.901 8 H 0.094 0.906 9 N -0.668 5.668 10 C 0.521 3.479 11 O -0.567 6.567 12 C 0.389 3.611 13 O -0.617 6.617 14 N -0.510 5.510 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.004 4.004 18 N -0.896 5.896 19 Si 1.012 2.988 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.264 1.264 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.416 0.584 31 H 0.401 0.599 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.830 8.462 7.580 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.004 3.996 4 H 0.147 0.853 5 C -0.184 4.184 6 C -0.184 4.184 7 C -0.006 4.006 8 H 0.112 0.888 9 N -0.319 5.319 10 C 0.304 3.696 11 O -0.447 6.447 12 C 0.174 3.826 13 O -0.507 6.507 14 N -0.144 5.144 15 C -0.476 4.476 16 H 0.116 0.884 17 C -0.208 4.208 18 N -0.533 5.533 19 Si 0.832 3.168 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.188 1.188 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.084 0.916 30 H 0.252 0.748 31 H 0.235 0.765 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.593 8.380 7.363 16.823 hybrid contribution 0.372 -0.450 -0.293 0.653 sum -12.221 7.930 7.070 16.193 Atomic orbital electron populations 1.22971 0.79449 1.03538 1.01136 1.87968 1.21679 1.27842 1.94647 1.24356 0.92399 0.86250 0.96553 0.85293 1.23446 0.97172 1.01091 0.96696 1.23252 0.99644 0.99857 0.95641 1.22687 0.92408 0.84539 1.00988 0.88838 1.45072 1.35660 1.19596 1.31566 1.20075 0.80913 0.86976 0.81646 1.90660 1.66852 1.49725 1.37459 1.19597 0.86733 0.89369 0.86909 1.90547 1.69928 1.50536 1.39664 1.41648 1.29539 1.17331 1.25874 1.19992 1.17025 0.95092 1.15499 0.88398 1.26557 0.97067 1.03518 0.93695 1.69555 1.31303 1.36983 1.15509 0.84676 0.77214 0.75606 0.79283 1.18929 1.18988 1.18811 0.93017 0.92155 0.89556 0.87954 0.90509 0.86029 0.91599 0.74753 0.76461 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.86 113.37 1.23 1.65 16 2 O -0.40 -10.06 10.01 -148.98 -1.49 -11.55 16 3 C 0.06 1.29 4.20 31.12 0.13 1.42 16 4 H 0.13 1.78 7.89 -2.39 -0.02 1.76 16 5 C -0.15 -2.64 7.79 31.12 0.24 -2.40 16 6 C -0.15 -3.04 7.88 31.12 0.25 -2.80 16 7 C 0.10 2.76 4.27 45.52 0.19 2.96 16 8 H 0.09 2.79 7.47 -2.39 -0.02 2.77 16 9 N -0.67 -24.64 4.97 -441.96 -2.19 -26.83 16 10 C 0.52 24.07 7.87 87.08 0.69 24.76 16 11 O -0.57 -27.79 16.07 -3.53 -0.06 -27.84 16 12 C 0.39 20.92 7.82 87.08 0.68 21.60 16 13 O -0.62 -35.21 16.03 -3.71 -0.06 -35.27 16 14 N -0.51 -28.93 5.25 -308.88 -1.62 -30.55 16 15 C -0.35 -19.98 9.67 84.35 0.82 -19.16 16 16 H 0.10 5.80 7.15 -2.91 -0.02 5.78 16 17 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 18 N -0.90 -48.87 13.03 21.76 0.28 -48.58 16 19 Si 1.01 41.37 29.56 68.60 2.03 43.40 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.42 15.37 7.80 -92.70 -0.72 14.64 16 31 H 0.40 22.89 7.35 -92.71 -0.68 22.21 16 32 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 Total: -1.00 -69.60 285.04 1.34 -68.26 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.25 Total: 40.70 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 4.69 Total: 28.27 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.53 Total: -105.97 kcal Atomic # 8 Polarization: -73.05 SS G_CDS: -1.61 Total: -74.66 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -69.60 1.34 -68.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724375095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.194 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds