Wall clock time and date at job start Mon Mar 30 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47019 * 270.00528 * 3 2 1 5 5 H 1.48499 * 109.46865 * 30.00152 * 3 2 1 6 6 H 1.48491 * 109.47220 * 150.00242 * 3 2 1 7 7 C 1.37874 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46610 * 179.97438 * 10 9 7 12 12 O 1.45210 * 109.46765 * 180.02562 * 11 10 9 13 13 C 1.34228 * 116.99659 * 179.97438 * 12 11 10 14 14 O 1.20820 * 120.00178 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99565 * 179.97438 * 13 12 11 16 16 H 1.09000 * 110.05724 * 27.23126 * 15 13 12 17 17 C 1.54262 * 110.03195 * 148.65506 * 15 13 12 18 18 C 1.54890 * 104.20063 * 142.89413 * 17 15 13 19 19 C 1.54890 * 102.74688 * 322.05776 * 18 17 15 20 20 C 1.53884 * 110.03147 * 265.81718 * 15 13 12 21 21 H 1.09006 * 110.02867 * 121.42965 * 20 15 13 22 22 O 1.42898 * 110.03309 * 0.02562 * 20 15 13 23 23 H 0.97004 * 120.00392 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47388 * 59.99782 * 9 7 2 25 25 H 1.09002 * 109.46874 * 299.99481 * 9 7 2 26 26 H 1.08991 * 109.47536 * 59.99924 * 10 9 7 27 27 H 1.09002 * 109.46974 * 299.99495 * 10 9 7 28 28 H 1.08994 * 109.47427 * 60.00240 * 11 10 9 29 29 H 1.08996 * 109.47434 * 299.99275 * 11 10 9 30 30 H 1.09008 * 110.48482 * 261.57170 * 17 15 13 31 31 H 1.08996 * 110.48809 * 24.08143 * 17 15 13 32 32 H 1.08993 * 110.75907 * 203.74467 * 18 17 15 33 33 H 1.09002 * 110.75701 * 80.37064 * 18 17 15 34 34 H 1.08998 * 110.48539 * 279.26490 * 19 18 17 35 35 H 1.09000 * 110.49144 * 156.62098 * 19 18 17 36 36 H 0.96694 * 113.99849 * 181.37587 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 8 2.4238 -6.0908 0.0018 13 6 1.9107 -7.3311 0.0029 14 8 0.7129 -7.4894 0.0029 15 6 2.8287 -8.5262 0.0030 16 1 3.7787 -8.2678 0.4707 17 6 2.1695 -9.6988 0.7582 18 6 2.5960 -10.9541 -0.0427 19 6 2.5415 -10.4587 -1.5092 20 6 3.0651 -9.0094 -1.4387 21 1 4.1300 -8.9854 -1.6706 22 8 2.3456 -8.1832 -2.3561 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8904 27 1 2.8718 -3.6043 -0.8895 28 1 0.8532 -5.0451 -0.8885 29 1 0.8539 -5.0446 0.8914 30 1 2.5442 -9.7530 1.7804 31 1 1.0848 -9.5925 0.7556 32 1 1.8918 -11.7709 0.1155 33 1 3.6080 -11.2578 0.2251 34 1 1.5166 -10.4763 -1.8800 35 1 3.1875 -11.0674 -2.1419 36 1 2.4373 -8.4500 -3.2809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745324923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:32 Heat of formation + Delta-G solvation = -165.668723 kcal Electronic energy + Delta-G solvation = -17334.085705 eV Core-core repulsion = 14396.243188 eV Total energy + Delta-G solvation = -2937.842517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48138 -38.47077 -36.19444 -35.16413 -33.90437 -31.66690 -29.84689 -27.95109 -26.90983 -23.61013 -22.03576 -21.26142 -20.29444 -19.56478 -18.25089 -16.92198 -16.47263 -16.19647 -15.78025 -15.44683 -14.59437 -14.43655 -14.20578 -13.77775 -13.09906 -12.80084 -12.29603 -12.08252 -11.91360 -11.80569 -11.64102 -11.43302 -11.16064 -10.94438 -10.88435 -10.60723 -10.53962 -10.24030 -10.23561 -10.06547 -9.62371 -9.42713 -9.11145 -8.34847 -5.99563 -4.02406 2.54753 3.03602 3.33556 3.39419 3.43281 3.88440 4.20088 4.28793 4.46685 4.67530 4.91630 5.03176 5.14068 5.19024 5.26600 5.30606 5.36214 5.51453 5.66649 5.70427 5.71773 5.78555 5.86120 6.05029 6.13489 6.63437 6.65169 6.98751 7.09219 7.43886 7.65724 7.77663 7.99188 8.16788 8.41107 9.03943 9.61520 11.11953 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059310 B = 0.003754 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.985866 B = 7457.070398 C = 7545.252327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.070 3.930 12 O -0.357 6.357 13 C 0.482 3.518 14 O -0.510 6.510 15 C -0.085 4.085 16 H 0.110 0.890 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.159 4.159 20 C 0.114 3.886 21 H 0.071 0.929 22 O -0.558 6.558 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 -22.201 -1.835 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.274 6.274 13 C 0.324 3.676 14 O -0.398 6.398 15 C -0.105 4.105 16 H 0.128 0.872 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.196 4.196 20 C 0.054 3.946 21 H 0.089 0.911 22 O -0.364 6.364 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.685 -21.762 -1.280 22.802 hybrid contribution 0.451 0.721 -0.550 1.013 sum 7.136 -21.042 -1.830 22.294 Atomic orbital electron populations 1.69970 1.06083 1.26699 1.50660 1.25034 0.94878 0.99342 0.95263 0.86543 0.79802 0.83255 0.78110 1.20631 1.21216 1.19820 1.21188 0.93119 0.90723 1.50831 0.92447 1.19056 0.93875 0.90779 0.97656 1.21744 0.99870 0.91162 1.01803 1.23421 0.91225 0.83698 1.01908 1.86469 1.42548 1.15240 1.83123 1.22856 0.88221 0.84575 0.71917 1.90594 1.16999 1.86633 1.45583 1.21768 0.99798 0.92138 0.96775 0.87177 1.22477 1.02608 0.91906 0.98544 1.22396 1.01777 0.97352 0.94181 1.23161 1.02670 0.95827 0.97976 1.22357 0.95332 0.89180 0.87691 0.91071 1.86633 1.73543 1.56247 1.20017 0.92928 0.96240 0.96257 0.92310 0.92217 0.91615 0.91857 0.90484 0.89192 0.90716 0.90966 0.90065 0.90903 0.77073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.39 5.53 -26.73 -0.15 -2.54 16 11 C 0.07 1.43 5.47 37.16 0.20 1.63 16 12 O -0.36 -6.67 10.22 -39.25 -0.40 -7.07 16 13 C 0.48 8.17 5.70 36.01 0.21 8.37 16 14 O -0.51 -10.03 15.49 -19.66 -0.30 -10.33 16 15 C -0.09 -1.00 3.40 -90.65 -0.31 -1.31 16 16 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.12 -1.15 6.31 -25.07 -0.16 -1.31 16 18 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 19 C -0.16 -1.21 6.55 -25.07 -0.16 -1.37 16 20 C 0.11 1.12 4.23 -25.61 -0.11 1.01 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 O -0.56 -6.83 11.78 -35.24 -0.42 -7.24 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.09 1.08 6.90 -51.93 -0.36 0.73 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.78 9.10 45.56 0.41 3.20 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -34.34 303.09 -7.01 -41.35 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.98 Total: -1.67 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.20 Total: -9.87 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.12 Total: -24.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.34 -7.01 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745324923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.318 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds