Wall clock time and date at job start Mon Mar 30 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47019 * 270.00528 * 3 2 1 5 5 H 1.48499 * 109.46865 * 30.00152 * 3 2 1 6 6 H 1.48491 * 109.47220 * 150.00242 * 3 2 1 7 7 C 1.37874 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46610 * 179.97438 * 10 9 7 12 12 O 1.45210 * 109.46765 * 180.02562 * 11 10 9 13 13 C 1.34228 * 116.99659 * 179.97438 * 12 11 10 14 14 O 1.20820 * 120.00178 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99565 * 179.97438 * 13 12 11 16 16 H 1.09000 * 110.05724 * 27.23126 * 15 13 12 17 17 C 1.54262 * 110.03195 * 148.65506 * 15 13 12 18 18 C 1.54890 * 104.20063 * 142.89413 * 17 15 13 19 19 C 1.54890 * 102.74688 * 322.05776 * 18 17 15 20 20 C 1.53884 * 110.03147 * 265.81718 * 15 13 12 21 21 H 1.09006 * 110.02867 * 121.42965 * 20 15 13 22 22 O 1.42898 * 110.03309 * 0.02562 * 20 15 13 23 23 H 0.97004 * 120.00392 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47388 * 59.99782 * 9 7 2 25 25 H 1.09002 * 109.46874 * 299.99481 * 9 7 2 26 26 H 1.08991 * 109.47536 * 59.99924 * 10 9 7 27 27 H 1.09002 * 109.46974 * 299.99495 * 10 9 7 28 28 H 1.08994 * 109.47427 * 60.00240 * 11 10 9 29 29 H 1.08996 * 109.47434 * 299.99275 * 11 10 9 30 30 H 1.09008 * 110.48482 * 261.57170 * 17 15 13 31 31 H 1.08996 * 110.48809 * 24.08143 * 17 15 13 32 32 H 1.08993 * 110.75907 * 203.74467 * 18 17 15 33 33 H 1.09002 * 110.75701 * 80.37064 * 18 17 15 34 34 H 1.08998 * 110.48539 * 279.26490 * 19 18 17 35 35 H 1.09000 * 110.49144 * 156.62098 * 19 18 17 36 36 H 0.96694 * 113.99849 * 181.37587 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 8 2.4238 -6.0908 0.0018 13 6 1.9107 -7.3311 0.0029 14 8 0.7129 -7.4894 0.0029 15 6 2.8287 -8.5262 0.0030 16 1 3.7787 -8.2678 0.4707 17 6 2.1695 -9.6988 0.7582 18 6 2.5960 -10.9541 -0.0427 19 6 2.5415 -10.4587 -1.5092 20 6 3.0651 -9.0094 -1.4387 21 1 4.1300 -8.9854 -1.6706 22 8 2.3456 -8.1832 -2.3561 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8904 27 1 2.8718 -3.6043 -0.8895 28 1 0.8532 -5.0451 -0.8885 29 1 0.8539 -5.0446 0.8914 30 1 2.5442 -9.7530 1.7804 31 1 1.0848 -9.5925 0.7556 32 1 1.8918 -11.7709 0.1155 33 1 3.6080 -11.2578 0.2251 34 1 1.5166 -10.4763 -1.8800 35 1 3.1875 -11.0674 -2.1419 36 1 2.4373 -8.4500 -3.2809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745324923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:32 Heat of formation + Delta-G solvation = -188.901144 kcal Electronic energy + Delta-G solvation = -17335.093138 eV Core-core repulsion = 14396.243188 eV Total energy + Delta-G solvation = -2938.849951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.73362 -39.46055 -37.65439 -36.01930 -35.92414 -33.70593 -30.78182 -28.94888 -28.55838 -25.43544 -23.38206 -22.18621 -21.89550 -20.65469 -19.30137 -18.63569 -17.99681 -17.63505 -17.05358 -16.52987 -16.39069 -15.55529 -15.37091 -14.89363 -14.59343 -14.11668 -13.88690 -13.73962 -13.50385 -12.92948 -12.81647 -12.52093 -12.46833 -12.37681 -12.06935 -12.01209 -11.95541 -11.75481 -11.53220 -11.41983 -11.36674 -11.19126 -10.86983 -10.58588 -8.22482 -6.34745 1.23747 1.40941 1.43167 1.54380 1.71146 2.41174 3.11044 3.12535 3.48597 3.59845 3.75300 3.96759 4.06242 4.14994 4.27081 4.37403 4.38568 4.42356 4.53856 4.70663 4.76906 4.85780 4.95403 5.05294 5.07699 5.14671 5.16468 5.40223 5.43649 5.57391 5.60836 5.78137 6.17573 6.77302 6.81659 6.84307 7.34837 8.89994 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059310 B = 0.003754 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.985866 B = 7457.070398 C = 7545.252327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.080 3.920 12 O -0.359 6.359 13 C 0.475 3.525 14 O -0.545 6.545 15 C -0.088 4.088 16 H 0.135 0.865 17 C -0.120 4.120 18 C -0.111 4.111 19 C -0.153 4.153 20 C 0.108 3.892 21 H 0.100 0.900 22 O -0.594 6.594 23 H 0.265 0.735 24 H -0.006 1.006 25 H -0.004 1.004 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -23.184 -1.900 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.007 3.993 12 O -0.276 6.276 13 C 0.320 3.680 14 O -0.435 6.435 15 C -0.107 4.107 16 H 0.153 0.847 17 C -0.157 4.157 18 C -0.149 4.149 19 C -0.190 4.190 20 C 0.050 3.950 21 H 0.118 0.882 22 O -0.403 6.403 23 H 0.074 0.926 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.220 -22.777 -1.357 24.610 hybrid contribution -0.378 0.964 -0.536 1.166 sum 8.842 -21.813 -1.894 23.613 Atomic orbital electron populations 1.70111 1.07971 1.27994 1.51383 1.26055 0.95823 1.03662 0.94483 0.85337 0.78624 0.77848 0.78576 1.19655 1.20722 1.18434 1.21617 0.93771 0.91782 1.51030 0.91580 1.18941 0.94259 0.92606 0.95336 1.21444 0.98688 0.90328 1.02455 1.23038 0.91059 0.84101 1.01139 1.86470 1.41931 1.15733 1.83463 1.24060 0.88816 0.84839 0.70276 1.90577 1.18875 1.86866 1.47173 1.22164 0.99565 0.89907 0.99112 0.84748 1.22524 1.00631 0.92616 0.99947 1.22427 1.03402 0.96024 0.93020 1.23129 1.02127 0.94877 0.98907 1.22644 0.96768 0.89746 0.85887 0.88199 1.86579 1.74400 1.57585 1.21781 0.92633 0.98735 0.98521 0.91346 0.91642 0.92830 0.92313 0.88765 0.92288 0.89942 0.88344 0.91955 0.87998 0.75038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -4.08 5.53 30.60 0.17 -3.91 16 11 C 0.08 3.35 5.47 71.98 0.39 3.74 16 12 O -0.36 -13.39 10.22 -51.39 -0.53 -13.92 16 13 C 0.48 16.14 5.70 71.24 0.41 16.54 16 14 O -0.55 -22.13 15.49 22.85 0.35 -21.78 16 15 C -0.09 -1.91 3.40 -10.81 -0.04 -1.95 16 16 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.12 -2.15 6.31 31.67 0.20 -1.95 16 18 C -0.11 -1.25 6.91 31.89 0.22 -1.03 16 19 C -0.15 -1.93 6.55 31.67 0.21 -1.72 16 20 C 0.11 1.87 4.23 31.32 0.13 2.01 16 21 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 22 O -0.59 -14.07 11.78 -148.97 -1.75 -15.83 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.05 2.33 8.13 -2.39 -0.02 2.32 16 29 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 30 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.06 1.44 6.90 -2.39 -0.02 1.42 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.40 5.48 9.10 -74.06 -0.67 4.81 16 Total: -1.00 -75.50 303.09 3.31 -72.20 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.38 Total: 8.24 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 2.54 Total: -17.84 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.28 Total: -57.82 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -1.93 Total: -51.52 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.50 3.31 -72.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745324923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.705 kcal (2) G-P(sol) polarization free energy of solvation -75.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds