Wall clock time and date at job start Mon Mar 30 2020 04:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47460 * 270.00102 * 3 2 1 5 5 H 1.48498 * 109.47112 * 30.00236 * 3 2 1 6 6 H 1.48496 * 109.47484 * 150.00291 * 3 2 1 7 7 C 1.37874 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00491 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47403 * 180.02562 * 9 7 2 11 11 O 1.45197 * 109.47093 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00221 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99808 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00109 * 179.97438 * 12 11 10 15 15 C 1.53009 * 109.47158 * 179.97438 * 14 12 11 16 16 O 1.42899 * 109.47113 * 180.02562 * 15 14 12 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 0.97000 * 120.00050 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47298 * 59.99334 * 9 7 2 23 23 H 1.09006 * 109.46359 * 299.99556 * 9 7 2 24 24 H 1.08995 * 109.47540 * 59.99356 * 10 9 7 25 25 H 1.09006 * 109.46898 * 299.99101 * 10 9 7 26 26 H 1.08997 * 109.47397 * 60.00476 * 14 12 11 27 27 H 1.08998 * 109.47229 * 299.99518 * 14 12 11 28 28 H 1.09007 * 109.46516 * 60.00039 * 15 14 12 29 29 H 1.09004 * 109.47113 * 300.00507 * 15 14 12 30 30 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 31 31 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 32 32 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 33 33 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 35 35 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 36 36 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0014 11 8 5.4735 -2.6366 -0.0002 12 6 6.0829 -3.8325 -0.0007 13 8 5.4248 -4.8459 -0.0016 14 6 7.5878 -3.9114 -0.0001 15 6 8.0216 -5.3787 -0.0002 16 8 9.4487 -5.4534 0.0010 17 6 9.9607 -6.7876 0.0004 18 6 11.4902 -6.7467 0.0023 19 6 12.2139 -7.3296 -1.2132 20 6 12.2323 -8.0795 0.1204 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6808 0.8904 23 1 3.8751 -0.6797 -0.8896 24 1 3.6584 -3.1495 -0.8919 25 1 3.6579 -3.1513 0.8880 26 1 7.9772 -3.4179 0.8903 27 1 7.9779 -3.4168 -0.8896 28 1 7.6322 -5.8726 -0.8905 29 1 7.6315 -5.8730 0.8895 30 1 9.6120 -7.3103 -0.8903 31 1 9.6105 -7.3115 0.8897 32 1 11.9367 -5.8776 0.4853 33 1 11.6005 -7.7418 -2.0144 34 1 13.1368 -6.8439 -1.5301 35 1 13.1672 -8.0870 0.6807 36 1 11.6309 -8.9853 0.1970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751718666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:53 Heat of formation + Delta-G solvation = -125.053812 kcal Electronic energy + Delta-G solvation = -16382.665533 eV Core-core repulsion = 13446.584210 eV Total energy + Delta-G solvation = -2936.081323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15249 -38.72254 -36.99321 -36.22456 -33.34129 -32.07640 -30.67688 -27.42392 -25.50019 -23.75442 -22.77399 -21.18368 -20.71830 -20.30405 -17.85377 -17.07632 -16.77094 -16.44954 -15.93551 -15.61627 -15.51928 -14.66691 -14.22296 -14.05793 -13.63321 -13.11553 -12.98705 -12.43873 -11.99595 -11.83966 -11.79368 -11.49157 -11.35621 -11.26006 -10.83403 -10.72030 -10.62065 -10.55720 -10.01105 -9.93580 -9.78626 -9.71748 -9.36316 -8.63538 -6.14054 -4.15466 2.43881 2.70452 3.27433 3.34010 3.35128 3.39336 3.69665 4.37726 4.41953 4.49604 4.61033 4.74440 4.83342 4.93536 5.08488 5.19479 5.20030 5.23436 5.28402 5.37207 5.48562 5.59739 5.61885 5.70094 5.82059 5.94230 5.94831 6.42789 6.75812 6.90504 7.16661 7.20307 7.60867 8.06208 8.38276 8.87341 9.45401 10.98449 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.073798 B = 0.002956 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.324979 B = 9471.115253 C = 9743.543921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.082 3.918 11 O -0.359 6.359 12 C 0.462 3.538 13 O -0.518 6.518 14 C -0.114 4.114 15 C 0.075 3.925 16 O -0.387 6.387 17 C 0.095 3.905 18 C -0.153 4.153 19 C -0.178 4.178 20 C -0.175 4.175 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.024 0.976 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.301 -12.305 -0.284 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.275 6.275 12 C 0.305 3.695 13 O -0.408 6.408 14 C -0.152 4.152 15 C -0.001 4.001 16 O -0.306 6.306 17 C 0.018 3.982 18 C -0.172 4.172 19 C -0.215 4.215 20 C -0.212 4.212 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.002 -12.297 -0.282 26.084 hybrid contribution -0.006 0.587 -0.026 0.588 sum 22.996 -11.709 -0.308 25.808 Atomic orbital electron populations 1.69894 1.06286 1.27229 1.50060 1.24942 0.94784 0.99221 0.94111 0.86738 0.80421 0.83220 0.78751 1.20048 1.21165 1.18739 1.20839 0.88262 0.95048 1.52450 0.90658 1.19633 0.97020 0.90142 0.97941 1.23411 0.72101 1.01660 1.01855 1.86480 1.26442 1.31947 1.82672 1.23198 0.91282 0.82249 0.72782 1.90655 1.67558 1.36621 1.45937 1.21085 0.88960 0.98124 1.07029 1.22154 0.80533 0.95406 1.02041 1.87786 1.20380 1.26881 1.95583 1.21993 0.91808 0.83961 1.00432 1.22148 0.93188 0.98365 1.03463 1.23084 1.02812 1.03894 0.91700 1.22982 1.02272 0.95148 1.00787 0.92418 0.95330 0.95764 0.91628 0.91616 0.86968 0.86962 0.92159 0.92132 0.92990 0.92688 0.86737 0.88609 0.88564 0.88365 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.24 4.42 -27.88 -0.12 -0.36 16 10 C 0.08 1.76 5.40 37.15 0.20 1.96 16 11 O -0.36 -6.73 10.22 -39.26 -0.40 -7.13 16 12 C 0.46 7.53 7.96 36.00 0.29 7.81 16 13 O -0.52 -9.74 15.73 -18.75 -0.29 -10.04 16 14 C -0.11 -1.33 6.18 -27.88 -0.17 -1.51 16 15 C 0.08 0.84 5.23 37.16 0.19 1.04 16 16 O -0.39 -4.26 10.34 -35.23 -0.36 -4.62 16 17 C 0.09 0.83 6.22 37.16 0.23 1.06 16 18 C -0.15 -1.19 6.06 -90.62 -0.55 -1.74 16 19 C -0.18 -1.18 10.18 -26.73 -0.27 -1.45 16 20 C -0.17 -1.07 10.25 -26.73 -0.27 -1.34 16 21 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 23 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 24 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 25 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 26 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.05 0.42 7.88 -51.93 -0.41 0.01 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -31.63 311.94 -6.99 -38.62 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.82 Total: -3.78 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.91 Total: -7.91 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.58 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -1.06 Total: -21.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.63 -6.99 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751718666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.438 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds